An integrated on-line prototype for coupling a microreactor to capillary electrophoresis for DNA sequencing has been demonstrated. A dye-labeled terminator cyclesequencing reaction is performed in a fused-silica capillary. Subsequently, the sequencing ladder is directly injected into a size-exclusion chromatographic column operated at ∼95 °C for purification. On-line injection to a capillary for electrophoresis is accomplished at a junction set at ∼70 °C. High temperature at the purification column and injection junction prevents the renaturation of DNA fragments during on-line transfer without affecting the separation. The high solubility of DNA in and the relatively low ionic strength of 1× TE buffer permit both effective purification and electrokinetic injection of the DNA sample. The system is compatible with highly efficient separations by a replaceable poly(ethylene oxide) polymer solution in uncoated capillary tubes. Future automation and adaptation to a multiple-capillary array system should allow high-speed, high-throughput DNA sequencing from templates to called bases in one step.Highly multiplexed capillary electrophoresis (CE), especially when combined with replaceable linear polymer solutions, for DNA sequencing has been demonstrated by many research groups. [1][2][3][4][5][6] The attractive features of such a system have been illustrated in terms of the speed, throughput, resolution, reliability, and sensitivity compared to current DNA sequencing instrumentation, particularly for sequencing the human genome. At present, highly multiplexed CE imposes a great demand on the throughput of sample preparation for DNA sequencing. Linear amplification sequencing (cycle sequencing), which is the Sanger dideoxy termination chemistry modified by the concept of polymerase chain reaction (PCR), has gained popularity due to the lower DNA template requirement, ease of automation, and effective denaturation of double-stranded DNA. 7,8 The marriage of automated cycle sequencing with highly multiplexed capillary array electrophoresis