In this study, several factors were analyzed in an effort to determine the effects of transglutaminase (TGase) treatment on sodium caseinate (NaCN), α-lactalbumin (α-La), and β-lactoglobulin (β-Lg) polymerization reactions. The results of SDS-PAGE showed that NaCN was slightly hydrolyzed to molecular weights of 50-400 kDa according to activation time. α-La formed high-molecular polymers of 30-300 kDa, whereas β-Lg remained almost completely unhydrolyzed. Melting temperatures of NaCN, α-La with and without TGase were all in the range of 100±10 o C under the endothermic curve, and the melting temperature of β-Lg with TGase was lower than that with TGase. When the proteins were incubated for 3 h with TGase, the micrographic structures showed a small quantity of sediment and broad layers. The final α-La residues remained at a level of 21.38%, and the TGase-treated α-La was confirmed to have undergone a profound loss of mass, to 18.25%. The DPPH-radical scavenging activity of NaCN and β-Lg with TGase treatment was higher than that observed in the untreated sample, while those of α-La increased with concentration.