Molecular dynamics simulations and free energy calculations were employed to investigate the evolution, formation probability, detailed balance and isomerization rate of small C cluster isomers at 2500 K. For C 10 , the isomer formation probability predicted by free energy is in good agreement with molecular dynamics simulation. However, for C 20 , C 30 and C 36 , the formation probability predicted by free energy is not in agreement with molecular dynamics and the detailed balance does not hold, indicating that the molecule system is in non-equilibrium. Such result may be attributed to the transformation barriers between cage, bowl and sheet isomers.