15Populations of European ash trees (Fraxinus excelsior) are being devastated by the invasive alien 16 fungus Hymenoscyphus fraxineus, which causes ash dieback (ADB). We sequenced whole 17 genomic DNA from 1250 ash trees in 31 DNA pools, each pool containing trees with the same 18 ADB damage status in a screening trial and from the same seed-source zone. A genome-wide 19 association study (GWAS) identified 3,149 single nucleotide polymorphisms (SNPs) associated 20 with low versus high ADB damage. Sixty-one of the 203 most significant SNPs were in, or close 21 to, genes with putative homologs already known to be involved in pathogen responses in other 22 plant species. We also used the pooled sequence data to train a genomic prediction (GP) model, 23 cross-validated using individual whole genome sequence data generated for 75 healthy and 75 24 damaged trees from a single seed source. Using the top 30% of our genomic estimated breeding 25 values from 200 SNPs, we could predict tree health with over 90% accuracy. We infer that ash 26 dieback resistance in F. excelsior is a polygenic trait that should respond well to both natural 27 selection and breeding, which could be accelerated using GP. 28 29