THE NUCLEAR ENVELOPE (NE) consists of two continuous membranes, with pores where the inner nuclear membrane (INM) meets the outer nuclear membrane (ONM) (7). V-type ATPases in the plasma membrane and intracellular membranes alter pH (⌬pH) and generate a transmembrane electrical potential (⌬⌿) across plasma membranes and intracellular compartments (6).In the accompanying article by Santos et al. (8) published in this issue of the American Journal of Physiology-Cell Physiology, the authors tested the hypothesis that the V-type ATPase was present and functional in the NE. The authors established that the nuclear pH is acidic, pH gradients across the nuclear membrane were bafilomycin and concanamycin sensitive and that the V-type ATPase was present in the NE by immunolocalization, and in both the ONM and INM by Western blots and ATPase assays.The flow of ions across the nuclear membranes is restricted (3). Prior studies to determine whether there was an electrochemical gradient of protons across the nuclear membrane were contradictory and no previous studies examined whether V-type ATPases might be involved. The authors used the ratiometric dye SNARF-1 to determine nuclear-cytoplasmic pH gradients. They examined RWPE-1 cells, a prostate epithelial cell line, LNCaP cells, a prostate cancer cell line, and highly tumorigenic and invasive CL-2 cells derived from LNCaP cells. They found that the steady-state pH of the nucleus was more acidic than the cytosol in RWPE-1 cells and LNCaP cells, but there was no difference in the steady-state pH between the nucleus and cytosol in CL-2 cells. The authors attribute the differences in their findings from those of others who also used ratiometric approaches to the failure of others to carry out in situ calibration for each cell type and each cell. In the present study, the authors used individual in situ calibration procedures for nucleus and cytosol, respectively, in contrast to other studies, which used either a single calibration curve obtained in vitro or in situ or the average of in situ calibration curves for nucleus and cytosol. The authors could have made a stronger case for their attribution of their differences from the studies of others by documenting how the different approach would change the measurements and by documenting that an average calibration could recapitulate the contradictory finding of others using SNARF-1.They found that absolute pH values varied in the various compartments among cells, so all values were also reported as ⌬pH. No differences were seen in the outward gradients between RWPE-1, LNCaP, and CL-2 cells in aggregate. However, there were larger inward H ϩ gradients in CL-2 cells than RWPE-1 or LNCaP cells, in aggregate. When ⌬pH was given as a percentage for each cell type, the majority of each cell type showed no ⌬pH, but a larger percentage of CL-2 cells than RWPE-1 cells had inward H ϩ gradients. The differences in ⌬pH among the cell types and between individual cells suggest that there are unknown mechanisms for regulation of the pH of the...