The heat shock response in Escherichia coli involves extensive induction of the heat shock proteins, with the concomitant suppression of the synthesis of the non-heat shock proteins. While the induction of the heat shock proteins has been shown to occur primarily at the transcriptional level, the suppression of non-heat shock proteins is poorly understood. We have investigated the possibility that an increased decay of non-heat shock mRNAs is a means of decreasing the synthesis of non-heat shock proteins during the heat shock response. Heat shock response-defective strains were compared with wild-type controls by several criteria to evaluate both mRNA stability and the induction of enzymes known to be involved in mRNA turnover. Our results indicate that increased mRNA decay is not a mechanism used to regulate the synthesis of non-heat shock proteins.The heat shock response, broadly defined, describes the induction of a set of heat shock proteins and the corresponding suppression of the synthesis of non-heat shock proteins when cells are shifted from a low to a high temperature (18,20). In Escherichia coli, there are at least 20 heat shock proteins that are significantly induced upon a temperature shift (12). While the induction of heat shock proteins is mediated at the level of transcription by the cr32 factor encoded by the rpoH (htpR) gene (12,20), little is known about the mechanism(s) of suppression of non-heat shock proteins during the heat shock response (20). Zengel and Lindahl showed that the transient decrease in synthesis from the S10 ribosomal protein operon during a temperature shift from 30 to 42°C was regulated at the level of transcription initiation and by the extent of transcription beyond the S10 attenuator (26). However, they also concluded that this regulation was independent of the rpoH allele (26). Kuriki showed that the heat shock-induced suppression of ,-lactamase synthesis was regulated by the initiation of translation and depended on a short nucleotide sequence containing the Shine-Dalgarno sequence and the ATG start codon of ,-lactamase (16,17).In contrast, there is evidence from yeast cells that mRNA degradation can affect the suppression of the synthesis of non-heat shock proteins during the heat shock response. A temperature shift from 23 to 36°C resulted in a decrease in the synthesis of ribosomal proteins, with a corresponding rapid decrease in the cellular levels of ribosomal protein mRNAs (14). Heat shock apparently increased the rate of ribosomal protein mRNA degradation three-to fourfold, resulting in the decrease in the steady state levels of these mRNAs (14). Additional evidence suggests that heat shock induces a factor that is responsible for the increased degradation of ribosomal protein mRNAs (14).While there is no direct evidence that the aforementioned factor is an RNase, such a "heat shock RNase" could affect non-heat shock protein synthesis by selectively degrading non-heat shock protein mRNAs during the heat shock response. Since the functions of many of the known he...