“…We defined the ATOH1 targetome as the 658 genes in the colon and 193 genes in the ileum with significantly enriched expression in ATOH1-positive cells that also were bound by ATOH1 (Figure 5 A , Supplementary Table 9). Consistent with the concept that ATOH1 functions as a key transcription factor for differentiation of the intestinal epithelium, several ATOH1 target genes were known to be involved in intestinal secretory lineage differentiation and function, such as Notch ligands Dll1 and Dll4 ; transcription factors Spdef ,17, 18
Sox9 ,39, 40
Gfi1 ,19, 41 and Creb3l1 42 ; transcription co-repressors Cbfa2t2 and Cbfa2t3 43, 44, 45, 46; and secretory lineage-specific genes such as Best2 , Spink4 , Muc2 , Sct , EphB3 , Xbp1 , and Clca3 17, 47, 48, 49. To gain broader insight into ATOH1 target genes in the intestines, we performed GO analysis using DAVID.…”