We
report the development
of a high-throughput, intracellular “transcription
block survival” (TBS) screening platform to derive functional
transcription factor antagonists. TBS is demonstrated using the oncogenic
transcriptional regulator cJun, with the development of antagonists
that bind cJun and prevent both dimerization and, more importantly,
DNA binding remaining a primary challenge. In TBS, cognate TRE sites
are introduced into the coding region of the essential gene, dihydrofolate
reductase (DHFR). Introduction of cJun leads to TRE binding, preventing
DHFR expression by directly blocking RNA polymerase gene transcription
to abrogate cell proliferation. Peptide library screening identified
a sequence that both binds cJun and antagonizes function by preventing
DNA binding, as demonstrated by restored cell viability and subsequent
in vitro hit validation. TBS is an entirely tag-free genotype-to-phenotype
approach, selecting desirable attributes such as high solubility,
target specificity, and low toxicity within a complex cellular environment.
TBS facilitates rapid library screening to accelerate the identification
of therapeutically valuable sequences.