Many lignans and isoflavonoids derived from (+)-pinoresinol/ (+)-lariciresinol and isoflavone reductases, respectively, have important roles in plant defense against pests and pathogens.In addition to their somewhat comparable physiological functions, other similarities are noted between these apparently unrelated branches of phenylpropanoid metabolism which suggest a phylogenetic link. These include similar enzymatic mechanisms, gene sequence homology, and putatively conserved protein phosphorylation sites for the pivotal branch point reductases, as well as comparable roles in [inducible] defense systems. Taken together with a detailed chemotaxonomic analysis of metabolite occurrence, it is proposed that during plant evolution, (+)-pinoresinol/(+)-lariciresinol reductase served as progenitor of the isoflavone reductases.Considerable emphasis continues to be placed upon deciphering, and ultimately biotechnologically exploiting, the natural defense mechanisms that plants employ in response to encroachment by herbivores, fungi, bacteria and viruses, e.g., as an attractive alternative to the application of pesticides, insecticides and other biocides. In this chapter, the intriguing parallels that have emerged between various lignans and isoflavonoids in plant chemical defenses are addressed. Both natural product classes appear to be derived from seemingly unrelated branches of phenylpropanoid and phenylpropanoid-acetate metabolism, which have originated in the early development of the modem seed plants [see (7) for a brief review of the phenylpropanoid pathway; and note that all references to angiosperm classification in this article are based on Dahlgren (2, 3)]. A number of similarities between the pathways has emerged, including striking homology of genes involved in presumed regulatory reductive steps, which leads to our reasoning that they are phylogenetically linked. Prior to elaboration of this hypothesis, a brief background on lignan and isoflavonoid nomenclature is necessary.