To solve the data security issue in intranet massive storage system, a Multi-Protocol Secure File System ( for short MPSFS) is designed. Firstly, the MPSFS supports the access of users with different protocols, and provides the unified access interface, so can achieve high performance in data storage and retrieval; secondly, with the help of other technologies such as identity authentication, access control and data encryption, the MPSFS can effectively ensure the data security in the intranet storage system. By the experiment, the MPSFS can provide good security and scalability for intranet massive storage system, and has less effect to the network I/O performance.