A novel bacterial sulphatase has been discovered in an extract of Flavobacterium heparinum. The enzyme hydrolyses the 3-0-sulphate from 2-deoxy-2-sulphamido-3-O-sulpho-~-glucose and 2-acetamido-2-deoxy-3-0-sulpho-D-glucose.The activity was purified 10 800-fold by chromatography successively on CM-Sepharose CL-6B, hydroxyapatite, taurine-Sepharose CL-4B and CM-Sepharose CL-6B. Sodium dodecylsulphate/polyacrylamide gel electrophoresis showed the enzyme to be homogeneous and of relative molecular mass 56000. Two novel assays were developed using 24 14C]acetamido-2-deoxy-3-O-sulpho-~-glucose and 2-deoxy-2-sulphamido-3-O-sulpho-~-glucose as respective substrates.The purified 3-0-sulphatase was shown to be free of all other known heparin-degrading enzymes. Optimal activity was at pH 7.5 for the disulphated substrate and pH 8.0 for the N-acetylated substrate. Enzyme activity was virtually unaffected by Na+, K + or Mg2' ions. A 1.2-fold enhancement of activity was effected by 0.002 mol dm-Ca2+. Inorganic phosphate and sulphate inhibited 3-0-sulphatase activity. The K , value of the N-acetylated substrate was determined to be 42 pmol dm-3. No activity was detected with 2-amino-2-deoxy-3-0-sulpho-~-glucose.The first report of glucosamine-3-0-sulphate in heparin came from permethylation studies by Danishefsky et al. [l]. Subsequently, Leder [2] synthesised l-O-methyl-2-deoxy-2-sulphamido-3-O-sulpho-~-glucopyranoside and detected a 3-0-sulphatase in human urine. The enzyme was partially purified and found to be active against the non-reducing terminal 3-0-sulphate of a pentasaccharide derived from the antithrombin-binding site of heparin [3]. 3C NMR examination of the antithrombin-binding region [4, 51 supported the existence of a 3-0-sulphated glucosamine moiety in this structure.In view of the presence of the mammalian enzyme [2] a similar activity was sought from the Flavobacterium heparinAbbreviutions. GlcN, 2-amino-2-deoxy-~-glucose; GlcNCbz, 2-[(benzyloxycarbonyl)amino]-2-deoxy-~-glucose; GIcN-~S, 2-amino-2-deoxy-3-0-sulpho-~-glucose; GIcNS-~S, 2-deoxy-2-sulphamido-3-O-sulpho-~-g~ucose; GIcNAc-~S, 2-acetamido-2-deoxy-3-O-sulpho-D-glucose; GIcNAc-~S, 2-acetamido-2-deoxy-6-0-sulpho-~-glucose; GIcNS-~S, 2-deoxy-2-sulphamido-6-O-sulpho-~-glucose; GlcNS, 2-deoxy-2-sulphamido-~-glucose ; GalNAc-6S, 2-acetamido-2-deoxy-6-0-sulpho-~-galactose; SDS, sodium dodecylsulphate.Enzymes. Chondroitinase AC, chondroitin sulphate AC lyase (EC 4.2.2.5); chondroitinase B, chondroitin sulphate B lyase (EC 4.2.2.-); heparinase, heparin lyase (EC 4.2.2.7); d4,5glycuronidase, glycuronidase for 4-deoxy-u-~-threo-hex-4-enopyranosyluronic acid-(1 +4)-2-deoxy-2-sulphamido-6-0-sulpho-~-glucose (EC 3.2.1 .-); 2-0-sulphatase for 4-deoxy-2-0-sulpho-a-~-threo-hex-4-enopyranosyl uronic acid-(I +4)-2-deoxy-2-sulphamido-6-0-sulpho-