The effect of thymic selection on the expressed human T-cell antigen receptor fl-chain variable region (Vat) gene repertoire was examined by using a multiprobe RNase protection assay. The relative abundance of transcripts for 22 Vp genes (encompassing 17 of the 20 human Vp gene subfamilies) within a thymus, and among 17 thymuses, was variable. On the basis of the presence of corresponding mRNAs, no genomic deletions were detected, but several coding region polymorphisms were identified. Analysis of mature T-cell subsets revealed the absence of complete "superantigen"-mediated Vp deletions, suggesting that this phenomenon, in contrast to mouse, is uncommon or absent in humans. However, several Vp genes were over-or underexpressed in one or both mature single-positive (CD418-or CD8+4-) thymocyte subsets compared to syngeneic total, mostly immature thymocytes. Whether these changes are induced by relatively weak superantigens or conventional antigens and whether the downshifts are caused by negative selection or lack of positive selection remains to be determined.
MATERIALS AND METHODSCell Preparations. Total thymocytes were prepared from 17 thymuses (HT-1 to HT-17) of children undergoing cardiovascular surgery at the Children's Hospital (Los Angeles). Donors ranged from 3 days to 10 years old and included eight males and nine females (10 Caucasians, 6 Hispanics, and 1 Asian). Double-positive (CD4+8+) and double-negative (CD4-8-) thymocytes were isolated by two-color fluorescence-activated cell sorting with appropriate antibodies (Becton Dickinson). Single-positive (CD4+8-or CD8+4-) thymocytes were isolated from five donors (HT-13 to HT-17) by using magnetic beads conjugated with anti-CD4 or anti-CD8 antibodies (Dynal, Great Neck, NY).RNA Probes. All probe templates were generated by the PCR method (19) on DNA isolated as described (20) from a single human thymus (HT-5, Caucasian male, 3 days old). PCR products were purified, ligated into Sma I-digested pGEM-7zf (Promega), and sequenced (21). Plasmids containing correct sequences were linearized (HindIII or EcoRI), and their transcription products were tested separately in the RNase protection assay. On the basis of the size of the protected bands, 22 linearized templates were then pooled into one of three probe sets with the following composition.
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