Abstract:In natural habitats, bacteria frequently need to adapt to changing environmental conditions. Regulation of transcription plays an important role in this process. However, riboregulation also contributes substantially to adaptation. Riboregulation often acts at the level of mRNA stability, which is determined by sRNAs, RNases, and RNA-binding proteins. We previously identified the small RNA-binding protein CcaF1, which is involved in sRNA maturation and RNA turnover in Rhodobacter sphaeroides. Rhodobacter is a … Show more
“…Recent studies of our group identified a novel small RNA‐binding protein, CcaF1, which is co‐expressed with four homologous CcsR sRNAs (CcsR1‐4) from a single promoter (Billenkamp et al, 2015; Grützner, Billenkamp, et al, 2021). While CcaF1 binds to various RNA targets (Grützner, et al, 2023; Grützner, Billenkamp, et al, 2021), affecting their stability and regulating gene expression, the CcsR sRNAs inhibit a glutathione‐dependent C1 metabolic pathway, leading to increased levels of antioxidative glutathione, which provides protection against reactive oxygen species and enhancing cell viability. Previous work documented a direct correlation between CcsR levels and stress resistance (Billenkamp et al, 2015; Grützner, Billenkamp, et al, 2021).…”
Section: Resultsmentioning
confidence: 99%
“…We recently showed that the small RNA‐binding DUF1127‐domain protein CcaF1 promotes the formation of photosynthesis complexes in R. sphaeroides (Grützner et al, 2023). ccaF1 is co‐transcribed with the CcsR sRNAs and also shows higher levels in the rnc − mutant.…”
RNase III is a dsRNA‐specific endoribonuclease, highly conserved in bacteria and eukarya. In this study, we analysed the effects of inactivation of RNase III on the transcriptome and the phenotype of the facultative phototrophic α‐proteobacterium Rhodobacter sphaeroides. RNA‐seq revealed an unexpectedly high amount of genes with increased expression located directly downstream to the rRNA operons. Chromosomal insertion of additional transcription terminators restored wild type‐like expression of the downstream genes, indicating that RNase III may modulate the rRNA transcription termination in R. sphaeroides. Furthermore, we identified RNase III as a major regulator of quorum‐sensing autoinducer synthesis in R. sphaeroides. It negatively controls the expression of the autoinducer synthase CerI by reducing cerI mRNA stability. In addition, RNase III inactivation caused altered resistance against oxidative stress and impaired formation of photosynthetically active pigment‐protein complexes. We also observed an increase in the CcsR small RNAs that were previously shown to promote resistance to oxidative stress. Taken together, our data present interesting insights into RNase III‐mediated regulation and expand the knowledge on the function of this important enzyme in bacteria.
“…Recent studies of our group identified a novel small RNA‐binding protein, CcaF1, which is co‐expressed with four homologous CcsR sRNAs (CcsR1‐4) from a single promoter (Billenkamp et al, 2015; Grützner, Billenkamp, et al, 2021). While CcaF1 binds to various RNA targets (Grützner, et al, 2023; Grützner, Billenkamp, et al, 2021), affecting their stability and regulating gene expression, the CcsR sRNAs inhibit a glutathione‐dependent C1 metabolic pathway, leading to increased levels of antioxidative glutathione, which provides protection against reactive oxygen species and enhancing cell viability. Previous work documented a direct correlation between CcsR levels and stress resistance (Billenkamp et al, 2015; Grützner, Billenkamp, et al, 2021).…”
Section: Resultsmentioning
confidence: 99%
“…We recently showed that the small RNA‐binding DUF1127‐domain protein CcaF1 promotes the formation of photosynthesis complexes in R. sphaeroides (Grützner et al, 2023). ccaF1 is co‐transcribed with the CcsR sRNAs and also shows higher levels in the rnc − mutant.…”
RNase III is a dsRNA‐specific endoribonuclease, highly conserved in bacteria and eukarya. In this study, we analysed the effects of inactivation of RNase III on the transcriptome and the phenotype of the facultative phototrophic α‐proteobacterium Rhodobacter sphaeroides. RNA‐seq revealed an unexpectedly high amount of genes with increased expression located directly downstream to the rRNA operons. Chromosomal insertion of additional transcription terminators restored wild type‐like expression of the downstream genes, indicating that RNase III may modulate the rRNA transcription termination in R. sphaeroides. Furthermore, we identified RNase III as a major regulator of quorum‐sensing autoinducer synthesis in R. sphaeroides. It negatively controls the expression of the autoinducer synthase CerI by reducing cerI mRNA stability. In addition, RNase III inactivation caused altered resistance against oxidative stress and impaired formation of photosynthetically active pigment‐protein complexes. We also observed an increase in the CcsR small RNAs that were previously shown to promote resistance to oxidative stress. Taken together, our data present interesting insights into RNase III‐mediated regulation and expand the knowledge on the function of this important enzyme in bacteria.
Rhodobacter sphaeroides is a facultative phototrophic bacterium that performs aerobic respiration when oxygen is available. Only when oxygen is present at low concentrations or absent are pigment–protein complexes formed, and anoxygenic photosynthesis generates ATP. The regulation of photosynthesis genes in response to oxygen and light has been investigated for decades, with a focus on the regulation of transcription. However, many studies have also revealed the importance of regulated mRNA processing. This study analyzes the phenotypes of wild type and mutant strains and compares global RNA-seq datasets to elucidate the impact of ribonucleases and the small non-coding RNA StsR on photosynthesis gene expression in Rhodobacter. Most importantly, the results demonstrate that, in particular, the role of ribonuclease E in photosynthesis gene expression is strongly dependent on growth phase.
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