In his affirmative answer to the Edelman-Reiner conjecture, Yoshinaga proved that the logarithmic derivation modules of the cones of the extended Shi arrangements are free modules. However, all we know about the bases is their existence and degrees. In this article, we introduce two distinguished bases for the modules. More specifically, we will define and study the simple-root basis plus (SRB+) and the simple-root basis minus (SRB−) when a primitive derivation is fixed. They have remarkable properties relevant to the simple roots and those properties characterize the bases.