Coibamide A (CbA) is a cyanobacterial lariat depsipeptide
that
selectively inhibits multiple secreted and integral membrane proteins
from entering the endoplasmic reticulum secretory pathway through
binding the alpha subunit of the Sec61 translocon. As a complex peptide-based
macrocycle with 13 stereogenic centers, CbA is presumed to adopt a
conformationally restricted orientation in the ligand-bound state,
resulting in potent antitumor and antiangiogenic bioactivity. A stereochemical
structure–activity relationship for CbA was previously defined
based on cytotoxicity against established cancer cell lines. However,
the ability of synthetic isomers to inhibit the biosynthesis of specific
Sec61 substrates was unknown. Here, we report that two less toxic
diastereomers of CbA, [L-Hiv2]-CbA and [L-Hiv2, L-MeAla11]-CbA, are pharmacologically active Sec61 inhibitors.
Both compounds inhibited the expression of a secreted reporter (Gaussia luciferase), VEGF-A, and a Type 1 membrane protein
(VCAM1), while [L-Hiv2]-CbA also decreased the
expression of ICAM1 and BiP/GRP78. Analysis of 43 different chemokines
in the secretome of SF-268 glioblastoma cells revealed different inhibitory
profiles for the two diastereomers. When the cytotoxic potential of
CbA compounds was compared against a panel of patient-derived glioblastoma
stem-like cells (GSCs), Sec61 inhibitors were remarkably toxic to
five of the six GSCs tested. Each ligand showed a distinct cytotoxic
potency and selectivity pattern for CbA-sensitive GSCs, with IC50 values ranging from subnanomolar to low micromolar concentrations.
Together, these findings highlight the extreme sensitivity of GSCs
to Sec61 modulation and the importance of ligand stereochemistry in
determining the spectrum of inhibited Sec61 client proteins.