Microsatellite markers were used to investigate the reproductive behavior of the damselfish Abudefduf sordidus at Johnston Atoll, Central Pacific Ocean. Genetic results indicated that ten males maintained guardianship over their nest territories for up to nine nest cycles during a 3.5 month period. Genotypes of 1025 offspring sampled from 68 nests (composed of 129 clutches) were consistent with 95% of the offspring being sired by the guardian male. Offspring lacking paternal alleles at two or more loci were found in 19 clutches, indicating that reproductive parasitism and subsequent alloparental care occurred. Reconstructed maternal genotypes allowed the identification of a minimum of 74 different females that spawned with these ten territorial males. Males were polygynous, mating with multiple females within and between cycles. Genetic data from nests, which consisted of up to four clutches during a reproductive cycle, indicated that each clutch usually had only one maternal contributor and that different clutches each had different dams. Females displayed sequential polyandry spawning with one male within a cycle but switched males in subsequent spawning cycles. These results highlight new findings regarding male parasitic spawning, polygyny, and sequential polyandry in a marine fish with exclusive male paternal care.The demersal spawning habits and exclusive paternal care of offspring by damselfishes have allowed their reproductive ecology to be relatively well studied among coral reef fishes [8,9]. While the focus of many damselfish studies is often on the correlates of male mating success, inferences about female behavior can also be made by quantifying the number of clutches spawned within a nest [10][11][12][13][14][15][16][17], and from direct observations of tagged females [16]. However, it is difficult to make continuous direct observations of fish spawning in the field due to a variety of factors including dive time limits, water visibility, fishes avoiding divers, and the need to determine the optimal times to be underwater for observations (e.g., dawn, dusk, night, or tidal). The territorial nature of male damselfish guarding their nests make them easy to observe, but very little is known regarding mate choice, spawning behavior, and frequency of female damselfish in this temporarily territorial species. The use of genetic methods can be utilized to quantify aspects of reproductive behavior for both sexes that are not always observable.Molecular markers have been an important tool for the study of mating systems of fishes, often highlighting important differences between the social and genetic mating systems [17][18][19][20]. Given the diversity of fishes (34,000+ species) [21], as well as the differences in their mating systems [3,22], there are many unanswered questions that lend themselves to molecular analysis. Damselfishes are good subjects for genetic mating system analysis due to their territorial nature, cyclic reproduction, and conspicuous nesting habits that allow the collection of offsprin...