“…These sites were 64, 72, 77, and 93 for PR; 35,85,102,and 200 for RT;and 201,206,211,218,230,256,265,283, and 285 for int. The only codon position predicted by FUBAR in the haplotypes was 230 for int, and it is associated with reduced susceptibility to integrase inhibitors (INSTI) 27 . Seven (4,34,41,43,44,45,64) and eight (22,40,84,92,93,95,105,111) codons were inferred to be under positive selection for V1V2 and V3 haplotype sequences, respectively.…”