The gram-negative enteric bacterium Proteus mirabilis is a frequent cause of urinary tract infections in individuals with long-term indwelling catheters or with complicated urinary tracts (e.g., due to spinal cord injury or anatomic abnormality). P. mirabilis bacteriuria may lead to acute pyelonephritis, fever, and bacteremia. Most notoriously, this pathogen uses urease to catalyze the formation of kidney and bladder stones or to encrust or obstruct indwelling urinary catheters. Here we report the complete genome sequence of P. mirabilis HI4320, a representative strain cultured in our laboratory from the urine of a nursing home patient with a long-term (>30 days) indwelling urinary catheter. The genome is 4.063 Mb long and has a G؉C content of 38.88%. There is a single plasmid consisting of 36,289 nucleotides. Annotation of the genome identified 3,685 coding sequences and seven rRNA loci. Analysis of the sequence confirmed the presence of previously identified virulence determinants, as well as a contiguous 54-kb flagellar regulon and 17 types of fimbriae. Genes encoding a potential type III secretion system were identified on a low-G؉C-content genomic island containing 24 intact genes that appear to encode all components necessary to assemble a type III secretion system needle complex. In addition, the P. mirabilis HI4320 genome possesses four tandem copies of the zapE metalloprotease gene, genes encoding six putative autotransporters, an extension of the atf fimbrial operon to six genes, including an mrpJ homolog, and genes encoding at least five iron uptake mechanisms, two potential type IV secretion systems, and 16 two-component regulators.Proteus mirabilis is not a common cause of urinary tract infections (UTI) in normal hosts (65). Surveys of uncomplicated cystitis or acute pyelonephritis show that P. mirabilis causes only a few percent of cases. Even in patients with recurrent UTI, the incidence of infection by this organism is only a few percentage points higher. However, this organism infects a very high proportion of patients with complicated urinary tracts, that is, urinary tracts with functional or anatomic abnormalities or with chronic instrumentation. In these patients, not only does this bacterium cause cystitis and acute pyelonephritis (20-22, 65, 73), but the production of urinary stones, a hallmark of infection with this organism (23), further compromises the already complicated urinary tract. P. mirabilis has sporadically been reported to be a causative agent of bacteremia and nosocomial infections (59); additional evidence suggests that this species is associated with rheumatoid arthritis (62).