Cys-scanning mutagenesis of putative transmembrane helix VI11 in the lactose permease of Escherichia coli (Frillingos S , Ujwal ML, Sun J, Kaback HR, 1997, Protein Sci 6:431-437) indicates that, although helix VI11 contains only one irreplaceable residue (Glu 269), one face is important for active lactose transport. In this study, the rate of inactivation of each N-ethylmaleimide (NEM)-sensitive mutant is examined in the absence or presence of P,D-galactopyranosyl 1 -thio-P,D-galactopyranoside (TDG). Remarkably, the analogue affords protection against inactivation with mutants Val 264 -+ Cys, Gly 268 + Cys, and Asn 272 -+ Cys, and alkylation of these singlecys mutants in right-side-out membrane vesicles with [ I4C]NEM is attenuated by TDG. In contrast, alkylation of Thr 265 -+ Cys, which borders the three residues that are protected by TDG, is enhanced markedly by the analogue. Furthermore, NEM-labeling in the presence of the impermeant thiol reagent methanethiosulfonate ethylsulfonate demonstrates that ligand enhances the accessibility of position 265 to solvent. Finally, no significant alteration in NEM reactivity is observed for mutant Gly 262 + Cys, Glu 269 + Cys, Ala 273 + Cys, Met 276 + Cys, Phe 277 + Cys, or Ala 279 -+ Cys. The findings indicate that a portion of one face of helix VI11 (Val 264, Gly 268, and Asn 272), which is in close proximity to Cys 148 (helix V), interacts with substrate, whereas another position bordering these residues (Thr 265) is altered by a ligandinduced conformational change.Keywords: active transport; bioenergetics; Cys modification; Cys replacement; ligand binding In the companion paper (Frillingos et al., 1997), Cys-scanning mutagenesis was employed to examine the role of putative transmembrane helix VI11 in the lactose permease of Escherichia coli. Residues were found on one face of putative helix VI11 where Cys-replacement followed by NEM treatment inactivates the permease. The face also contains Glu 269, a residue that cannot be replaced without abolishing active lactose transport (Ujwal et al., 1994;Franco & Brooker, 1994). According to the recentlyformulated packing model of helices V and VII-XI ( Wu et al., 1995bWu et al., , 1996, part of this face of helix VI11 is close to residues Arg 302, His 322, and Glu 325, which are essential for IactoselH' symport (see Kaback, 1987Kaback, , 1990, and another part is close to Cys 148 and Met 145, which interact directly with substrate (Jung et al., 1994b; Wu & Kaback, 1994) (see Fig. 5). The observations Reprint requests to: Ronald Kaback, HHMIlUCLA 6-720 MacDonald Research Labs, Box 951662, Los Angeles, California 90095-1662; e-mail: ronaldk@hhmi.ucla.edu.Abbreviafions: lac, lactose; NEM, N-ethylmaleimide; TDG, P,D-galactopyranosyl I-thio-p,~-galactopyranoside; MTSES, methanethiosulfonate ethylsulfonate; IPTG, isopropyl I-thio-P,D-galactopyranoside; C-less permease, functional lactose permease devoid of Cys residues; DTT, dithiothreitol; PMS, phenazine methosulfate; RSO, right-side-out; K p , , potassium phosphate; DM, ...