The characterization of the transcriptome and proteome of Plasmodium
falciparum has been a tremendous resource for the understanding of the
molecular physiology of this parasite. However, the translational dynamics that link
steady-state mRNA with protein levels are not well understood. In this study, we
bridge this disconnect by measuring genome-wide translation using ribosome profiling,
through five stages of the P. falciparum blood phase developmental
cycle. Our findings show that transcription and translation are tightly coupled, with
overt translational control occurring for less than 10% of the transcriptome.
Translationally regulated genes are predominantly associated with merozoite egress
functions. We systematically define mRNA 5′ leader sequences, and 3′
UTRs, as well as antisense transcripts, along with ribosome occupancy for each, and
establish that accumulation of ribosomes on 5′ leaders is a common transcript
feature. This work represents the highest resolution and broadest portrait of gene
expression and translation to date for this medically important parasite.DOI:
http://dx.doi.org/10.7554/eLife.04106.001