Bcl2 not only prolongs cell survival but also suppresses the repair of abasic (AP) sites of DNA lesions. Apurinic/apyrimidinic endonuclease 1 (APE1) plays a central role in the repair of AP sites via the base excision repair pathway. Here we found that Bcl2 down-regulates APE1 endonuclease activity in association with inhibition of AP site repair. Exposure of cells to nitrosamine 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone results in accumulation of Bcl2 in the nucleus and interaction with APE1, which requires all of the BH domains of Bcl2. Deletion of any of the BH domains from Bcl2 abrogates the ability of Bcl2 to interact with APE1 as well as the inhibitory effects of Bcl2 on APE1 activity and AP site repair. Overexpression of Bcl2 in cells reduces formation of the APE1⅐XRCC1 complex, and purified Bcl2 protein directly disrupts the APE1⅐XRCC1 complex with suppression of APE1 endonuclease activity in vitro. Importantly, specific knockdown of endogenous Bcl2 by RNA interference enhances APE1 endonuclease activity with accelerated AP site repair. Thus, Bcl2 inhibition of AP site repair may occur in a novel mechanism by down-regulating APE1 endonuclease activity, which may promote genetic instability and tumorigenesis.Apurinic/apyrimidinic (AP) 2 or abasic sites are the most common form of DNA damage with about 20,000 -50,000 sites produced in each cell/day (1, 2). AP sites can result from spontaneous and chemically initiated hydrolysis through various conditions, including ionizing radiation, UV irradiation, oxidative stress, and exposure to cigarette smoking (1-4). Human apurinic/apyrimidinic endonuclease 1 (APE1) is a major constituent of the base excision repair (BER) pathway of AP sites of DNA lesions (3). Additionally, APE1 is also named as redox effector factor-1 (1) because of its redox abilities on different redox-regulated transcription factors (3, 5). Two activities of this molecule are split into two functionally independent domains of the protein itself: the N terminus is principally devoted to the redox activity, whereas the C terminus exerts enzymatic activity on the repair of AP sites of DNA lesions (3, 5). APE1 specifically binds to abasic sites and cuts the 5Ј phosphodiester bond with its endonuclease activity to produce a DNA primer with 3Ј hydroxyl end, which is a required step in the BER repair pathway (3). Therefore, APE1 is an essential endonuclease and plays a central role in the repair of AP sites of DNA lesions.Bcl2, a major cellular oncogenic protein, plays pivotal roles in enhancing cell survival, retarding G 1 /S cell cycle transition, and attenuating DNA repair (4, 6, 7). Because overexpression of Bcl2 results in lymphomagenesis in transgenic mice, this suggests that Bcl2, in addition to its survival activity, may also potentially have an oncogenic property (8). However, the mechanism(s) by which Bcl2 facilitates oncogenesis is not fully understood. The oncogenic effect of Bcl2 may result from its multiple cellular properties. Bcl2 was originally discovered as a gene product at th...