The uncoupling protein (UP) of isolated brown adipose tissue mitochondria was studied with respect to the mechanism of control of UP function by purine nucleotides. Passive transport of H + and C1-was followed simultaneously in a KC1 medium. With both GDP and ATP a higher sensitivity of C1-transport (apparent Ki = 2.2 pM and 4.7 pM respectively) than of H + transport (apparent Kj = 7.7 pM and 34 pM respectively) was observed. Chemical modification of isolated mitochondria by diazobenzenesulfonate (DABS) up to 75 pmol/mg protein did not affect the transport, its ionic selectivity and regulation by endogenous free fatty acids. In contrast, the sensitivity to purine nucleotides of both H + and CI-translocation was decreased (apparent Ki increased 71 and 47 times respectively). DABS decreased the affinity of [3H]GDP for the specific nucleotide-binding site on mitochondria (Kd increased from 2.7 pM to 13 pM) and depressed, to a smaller extent, the GDP-binding capacity.Correlation between occupancy of the specific nucleotide-binding site by GDP and inhibition of transport yielded a linear relationship for C1-transport in control mitochondria. For H t transport in the control, and for both H ' and C1-transports in DABS-treated mitochondria, a biphasic correlation was obtained.The results show that different structural parts of UP are involved in transport and its control by the regulatory ligands and that, in addition to binding of purine nucleotides to UP, the inhibition of ion transport by purine nucleotides depends on an intrinsic factor modulating the inhibitory effect.The thermogenic function of brown adipose tissue mitochondria results from the dissipation of the respirationgenerated electrochemical potential gradient of protons via a regulatable H' channel (for reviews see [I, 2]), the so-called uncoupling protein (UP [3]), or thermogenin [l]. This protein is distinct from mitochondrial H + -ATPase [4 -61 and is specific for brown-fat mitochondria [7, 81. The UP is most probably also involved in the unusually high permeability of brown-fat mitochondria to anions (especially C1-and Br -, but also NO;) at neutral pH [9 -111. However, the physiological meaning of the latter transport function of UP is not clear.Both H' and anion permeability of brown-fat mitochondria are decreased by purine nucleotide diphosphates and triphosphates (GDP, ADP,GTP and ATP [9 -12]), while removal of endogenous free fatty acids specifically diminishes only the H + permeability [9,10,13, 141 ular mass to be close to 32 kDa [24] and showed a high degree of homology between rat and hamster UP [23]. A significant structural similarity was also found between UP and the mitochondrial ATP/ADP carrier and it was suggested [21] that these two proteins, together with some other mitochondrial anion carriers, are derived from the same ancestral gene. The mechanism of ion translocation through UP and the control by purine nucleotides and free fatty acids are still poorly understood. It was suggested that UP exists in the membrane as a functional di...