Endonuclease II (deoxyribonucleate oligonucleotidohydrolase, EC 3.1.4.30) of Escherichia coli has been shown to break phosphodiester bonds in alkylated DNA and depurinated DNA. The hypothesis that depurination. is a step in the mechanism of the reaction with alkylated DNA is supported by in vitro experiments with DNA reacted with N-methyl-Nl-nitrosourea. Endonuclease I1 releases 08-methylguanine and 3-methyladenine, but not 7-methylguanine, from DNA that has been methylated by the carcinogen N-methyl-N-nitrosourea.Endonuclease II (deoxyribonucleate oligonucleotidohydrolase, EC 3.1.4.30) of Escherichia coli is an enzyme capable of breaking p)hosphodiester bonds in DNA which has been reacted with the alkylating agent methyl methanesulfonate (MAIS) (1-3). MMTIS-treated DNA contain.s 7-methylguanine and 3-methyladenine. Endonuclease IT also recognizes dep)urinated and depurinated-reduced sites in DNA (4) and at high concentrations makes a limited iiumber of single-strand breaks in native DNA from T-4 and T-7 bacterioplhages (5). The enzyme hydrolyses the phosphodiester bond.s in native D)NA to yield 5'-phosphomonoesters (5), and indirect evidence has been presented to support the proposal that enzymeinduced chain breaks are on the 5'-phosphate side of the depurinated reduced sites (5). Because the enzyme recognizes both alkylated and depurinated sites in the DNA, it was l)ostillated that the process of depurination was an intermediate step prior to phosphodiester bond cleavage of alkylated DNA. Enzymatic depurination by the endonuclease II preparation has now been demonstrated. This has allowed us to observe a specificity of the enzyme for some but not all of the methylated bases. This paper describes the ability of the enzyme to release 00-methylguanine and 3-methyladenine, and the inability of the enzyvme to release 7-methylguanine from DNA 'that has been methylated by the carcinogen ,Nmethyl-N-nitrosourea (MNU).