The translational repressor protein eIF4E-binding protein 1 (4E-BP1, also termed PHAS-I) is regulated by phosphorylation through the rapamycin-sensitive mTOR (mammalian target of rapamycin) pathway. Recent studies have identified two regulatory motifs in 4E-BP1, an mTOR-signaling (TOS) motif in the C terminus of 4E-BP1 and an RAIP motif (named after its sequence) in the N terminus. Other recent work has shown that the protein raptor binds to mTOR and 4E-BP1. We show that raptor binds to full-length 4E-BP1 or a Cterminal fragment containing the TOS motif but not to an N-terminal fragment containing the RAIP motif. Mutation of several residues within the TOS motif abrogates binding to raptor, indicating that the TOS motif is required for this interaction. 4E-BP1 undergoes phosphorylation at multiple sites in intact cells. The effects of removal or mutation of the RAIP and TOS motifs differ. The RAIP motif is absolutely required for phosphorylation of sites in the N and C termini of 4E-BP1, whereas the TOS motif primarily affects phosphorylation of Ser-64/65, Thr-69/70, and also the rapamycin-insensitive site Ser-101. Phosphorylation of N-terminal sites that are dependent upon the RAIP motif is sensitive to rapamycin. The RAIP motif thus promotes the mTOR-dependent phosphorylation of multiple sites in 4E-BP1 independently of the 4E-BP1/raptor interaction.Eukaryotic initiation factor (eIF)-4E 1 plays a key role in mRNA translation in mammalian cells and in its regulation (1). eIF4E binds the 5Ј-cap structure of the mRNA, which contains the 7-methyl-GTP (m 7 GTP) moiety. It also interacts with the scaffold protein eIF4G and thereby recruits 40 S ribosomal subunits to the mRNA (2). A large body of evidence shows that eIF4E plays key roles in cell proliferation (1) and cell survival/ apoptosis (3). For example, overexpression of eIF4E can transform cells (4,5), and many human tumor cells express high levels of this protein (6). Nuclear eIF4E seems to be important in the export of certain mRNAs to the cytoplasm such as that for cyclin D1 (7), which is important in cell cycle progression.The transforming abilities of eIF4E may be linked to this effect (8,9).The availability of eIF4E for binding to eIF4G is regulated by its interaction with heat-stable proteins termed eIF4E-binding proteins (4E-BPs). 4E-BP1 is by far the best understood of these. Phosphorylation of 4E-BP1 leads to its release from eIF4E, allowing eIF4E to form initiation complexes with eIF4G (1). Expression of 4E-BP1 reverses the transforming ability of increased levels of eIF4E (10). Phosphorylation of 4E-BP1 induced by insulin or other agents is blocked by the immunosuppressant rapamycin, a specific inhibitor of the mammalian target of rapamycin (mTOR) (11). 4E-BP1 undergoes phosphorylation at up to seven sites in intact cells; phosphorylation is complex, hierarchical, and, at some sites, is required for the subsequent modification of others (12-15).Regulatory motifs have been identified in the N and C termini of 4E-BP1. The N terminus contains the so-c...