2015
DOI: 10.1186/s13099-015-0062-4
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The prediction of virulence based on presence of virulence genes in E. coli may not always be accurate

Abstract: Now that microbial whole genome sequencing is in reach of many researchers, it is common to infer virulent properties of a given bacterial isolate based on the presence of virulence genes. However, this may lead to inaccurate presumptions of virulence. Using the findings of a recent publication (Da Silva Santos et al. Gut Pathog 7:2, 2015) where virulence was inferred from a genome sequence and subsequently confirmed by in vitro analysis, we present an alternative view on the case described in that publication… Show more

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Cited by 15 publications
(10 citation statements)
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“…While the presence of virulence genes as a prediction of bacterial virulence has been questioned (82), results corroborating this in the present study can be found in the literature. In Toxoplasma gondii-induced models of murine colitis, researchers have shown that nonpathogenic E. coli K-12 and probiotic E. coli Nissle 1917 incite a proinflammatory, postinfectious response (83).…”
Section: Discussionsupporting
confidence: 90%
“…While the presence of virulence genes as a prediction of bacterial virulence has been questioned (82), results corroborating this in the present study can be found in the literature. In Toxoplasma gondii-induced models of murine colitis, researchers have shown that nonpathogenic E. coli K-12 and probiotic E. coli Nissle 1917 incite a proinflammatory, postinfectious response (83).…”
Section: Discussionsupporting
confidence: 90%
“…Salmonellosis and Salmonella infections considered as critical threats to human and animal health. In this study, the prevalence of S. enterica serovars in chicken and beef meat was 8.3%, which was considerably lower than incidence rates that reported in Ethiopia (12.0% in raw meat) [ 26 ], Canary islands (16.5% in chicken meat) [ 27 ], Northwestern Spain (17.9% in chicken) [ 28 ], Ethiopia (17.9% in chicken and giblets) [ 29 ], and Egypt (10.0% in poultry meat) [ 7 ]. On the other hand, it was higher than reported previously in meat products in Egypt (6.6%) and in ground beef in the United States (4.2%) [ 30 , 31 ].…”
Section: Discussionmentioning
confidence: 78%
“…The gene cassettes of class 1 integron which detected in Salmonella spp. isolated from poultry meat in Egypt were harbouring aac (3)-Id, aad A2, aad A4, aad A7, sat , dfr A15, lnu F and est X resistance genes [ 7 ]. In a study conducted in Portugal, 75.0% of S. enterica isolated from different sources including food products had one or two class 1 integrons [ 63 ].…”
Section: Discussionmentioning
confidence: 99%
“…Symbioflor E. coli was considered to be safe for human consumption, objecting the last concern by Beutin and colleague experts. These findings, though not surprising, make it more difficult to predict the virulent properties of a given E. coli strain, even when a complete genome sequence is available, as was discussed in a short paper by Wassenaar and Gunzer [34]. In their publication the authors also drew attention to the genomes of Symbioflor E. coli as these contain virulence genes and are nevertheless safe for human use.…”
Section: Resultsmentioning
confidence: 99%