31Background: The t(12;21)(p13;q22), which fuses ETV6 and RUNX1 genes, is the most common genetic 32 abnormality in children with B-cell precursor acute lymphoblastic leukaemia. The implication of the 33 fusion protein in leukaemogenesis seems to be clear. However, its role in the maintenance of the disease 34 continues to be controversial. Aim: To eliminate the expression of the ETV6/RUNX1 fusion gene, in order 35 to elucidate the effect in the leukaemic cells. Methods: Generation of an in vitro ETV6/RUNX1 knock out 36 model using the genetic modification system CRISPR/Cas9. Functional studies and generation of edited-37 cell xenograft model were carried out. Results: For the first time, the expression of ETV6/RUNX1 fusion 38 gene was completely eliminated, thus generating a powerful model on which to study the role of the 39 fusion gene in leukaemic cells. ETV6/RUNX1 inactivation caused the deregulation of cellular processes 40 that could be participating in the maintenance of the leukaemic phenotype, such as differentiation and 41 lymphoid activation, apoptosis, cell signaling and cell migration. Tumour cells showed higher levels of 42 apoptosis, lower proliferation rate and a greater sensitivity to PI3K inhibitors in vitro along as a decrease 43 in tumour growth in xenografts models after ETV6/RUNX1 fusion gene abrogation. Conclusions: 44 ETV6/RUNX1 fusion protein plays a fundamental role in the maintenance of the leukaemic phenotype, 45 thereby being making the fusion protein a potential therapeutic target. 46 47 BACKGROUND