1997
DOI: 10.1016/s0969-2126(97)00178-0
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The open conformation of a Pseudomonas lipase

Abstract: . The interfacial activation of Pseudomonas lipases involves conformational rearrangements of surface loops and appears to conform to models of activation deduced from the structures of fungal and mammalian lipases. Factors controlling the conformational rearrangement are not understood, but a comparison of crystallization conditions and observed conformation suggests that the conformation of the protein is determined by the solution conditions, perhaps by the dielectric constant.

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Cited by 272 publications
(225 citation statements)
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“…Topologically the bacterial lipases consist of a variant of the ␣-␤ hydrolase fold and a cap domain, which includes a lid subdomain (helices ␣4 and -5). The catalytic triad in bacterial lipases is buried (16,17); the substrate gains access into the active site when a large hinge motion displaces the lid subdomain sidewise (18,19). Bacterial lipases with a buried catalytic triad and a buried lipid binding site, on one hand, and PPT1 with an exposed catalytic triad and an exposed lipid binding site represent the extremes.…”
Section: Resultsmentioning
confidence: 99%
“…Topologically the bacterial lipases consist of a variant of the ␣-␤ hydrolase fold and a cap domain, which includes a lid subdomain (helices ␣4 and -5). The catalytic triad in bacterial lipases is buried (16,17); the substrate gains access into the active site when a large hinge motion displaces the lid subdomain sidewise (18,19). Bacterial lipases with a buried catalytic triad and a buried lipid binding site, on one hand, and PPT1 with an exposed catalytic triad and an exposed lipid binding site represent the extremes.…”
Section: Resultsmentioning
confidence: 99%
“…An extensive search of the PDB shows that this motif is not characteristic for magnesium binding, but rather for calcium binding. Similar loops bind Ca 2+ cations in different bacterial lipases, such as lipases from Pseudomonas glumae (formerly Chromobacterium viscosum) (Noble et al 1993;Lang et al 1996) and Burkholderia cepacia (formerly Pseudomonas cepacia) (Shrag et al 1997;Luić et al 2001). The lipases are not the only enzymes that contain such a metal binding motif; it is also observed in human DNA polymerase b (Pelletier and Sawaya 1996).…”
Section: Metal Bindingmentioning
confidence: 99%
“…It should be noticed that at pH 7, lipase from B. cepacia is negatively charged (isoelectric point = 5.2) 29 while the superparamagnetic nanoparticles exhibit a positive charge due to the protonation of the aliphatic amines (pKa ca. 9).…”
Section: Resultsmentioning
confidence: 99%