The Multi-Kingdom Microbiome of Wintering Migratory Birds in Poyang Lake, China
Jia Liu,
Xiyan Li,
Wentao Song
et al.
Abstract:Wild birds are a natural reservoir for zoonotic viruses. To clarify the role of migratory birds in viruses spread in Poyang Lake, we investigated the microbiome of 250 wild bird samples from 19 species in seven orders. The bacterial and viral content abundance and diversity were preliminarily evaluated by Kraken2 and Bracken. After de novo assembly by Megahit and Vamb, viral contigs were identified by CheckV. The reads remapped to viral contigs were quantified using Bowtie2. The bacterial microbiome compositio… Show more
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