Abstract:The E. coli MinCDE system has become a paradigmatic reaction–diffusion system in biology. The membrane-bound ATPase MinD and ATPase-activating protein MinE oscillate between the cell poles followed by MinC, thus positioning the main division protein FtsZ at midcell. Here we report that these energy-consuming MinDE oscillations may play a role beyond constraining MinC/FtsZ localization. Using an in vitro reconstitution assay, we show that MinDE self-organization can spatially regulate a variety of functionally … Show more
“…Each measurement and background was averaged, and statistical outliers were eliminated. Statistical outliers were defined based on the maximum signal for each scan that was less than the first quartile (Q1) or greater than the third quartile (Q3) ( 18 ). Five scans were taken, and discarded reads were not replaced.…”
DNA adenine methylation by Caulobacter crescentus Cell Cycle Regulated Methyltransferase (CcrM) is an important epigenetic regulator of gene expression. The recent CcrM-DNA cocrystal structure shows the CcrM dimer disrupts four of the five base pairs of the (5′-GANTC-3′) recognition site. We developed a fluorescence-based assay by which Pyrrolo-dC tracks the strand separation event. Placement of Pyrrolo-dC within the DNA recognition site results in a fluorescence increase when CcrM binds. Non-cognate sequences display little to no fluorescence changes, showing that strand separation is a specificity determinant. Conserved residues in the C-terminal segment interact with the phospho-sugar backbone of the non-target strand. Replacement of these residues with alanine results in decreased methylation activity and changes in strand separation. The DNA recognition mechanism appears to occur with the Type II M.HinfI DNA methyltransferase and an ortholog of CcrM, BabI, but not with DNA methyltransferases that lack the conserved C-terminal segment. The C-terminal segment is found broadly in N4/N6-adenine DNA methyltransferases, some of which are human pathogens, across three Proteobacteria classes, three other phyla and in Thermoplasma acidophilum, an Archaea. This Pyrrolo-dC strand separation assay should be useful for the study of other enzymes which likely rely on a strand separation mechanism.
“…Each measurement and background was averaged, and statistical outliers were eliminated. Statistical outliers were defined based on the maximum signal for each scan that was less than the first quartile (Q1) or greater than the third quartile (Q3) ( 18 ). Five scans were taken, and discarded reads were not replaced.…”
DNA adenine methylation by Caulobacter crescentus Cell Cycle Regulated Methyltransferase (CcrM) is an important epigenetic regulator of gene expression. The recent CcrM-DNA cocrystal structure shows the CcrM dimer disrupts four of the five base pairs of the (5′-GANTC-3′) recognition site. We developed a fluorescence-based assay by which Pyrrolo-dC tracks the strand separation event. Placement of Pyrrolo-dC within the DNA recognition site results in a fluorescence increase when CcrM binds. Non-cognate sequences display little to no fluorescence changes, showing that strand separation is a specificity determinant. Conserved residues in the C-terminal segment interact with the phospho-sugar backbone of the non-target strand. Replacement of these residues with alanine results in decreased methylation activity and changes in strand separation. The DNA recognition mechanism appears to occur with the Type II M.HinfI DNA methyltransferase and an ortholog of CcrM, BabI, but not with DNA methyltransferases that lack the conserved C-terminal segment. The C-terminal segment is found broadly in N4/N6-adenine DNA methyltransferases, some of which are human pathogens, across three Proteobacteria classes, three other phyla and in Thermoplasma acidophilum, an Archaea. This Pyrrolo-dC strand separation assay should be useful for the study of other enzymes which likely rely on a strand separation mechanism.
“…This gradient was capable of localizing FtsZ-YFP-MTS filaments to the middle of the compartment [61]. Very recently, our lab has shown that—even in the absence of MinC—MinD and MinE can support the anticorrelated movement and oscillation of model membrane proteins, including mCherry fused to various membrane targeting sequences, lipid-anchored streptavidin and FtsZ-YFP-MTS [88]. Moreover, if the proteins are permanently anchored to the membrane, MinDE oscillations can localize them to the middle of a microcompartment [88].…”
Section: Synthetic Cell Division Via Reconstitution Of E Coli Divisomentioning
confidence: 99%
“…Very recently, our lab has shown that—even in the absence of MinC—MinD and MinE can support the anticorrelated movement and oscillation of model membrane proteins, including mCherry fused to various membrane targeting sequences, lipid-anchored streptavidin and FtsZ-YFP-MTS [88]. Moreover, if the proteins are permanently anchored to the membrane, MinDE oscillations can localize them to the middle of a microcompartment [88]. This implies that MinD and MinE are sufficient to generate a generic cue for the localization of membrane proteins, which may also be relevant for simplified divisome localization machineries.…”
Section: Synthetic Cell Division Via Reconstitution Of E Coli Divisomentioning
Reproduction, i.e. the ability to produce new individuals from a parent organism, is a hallmark of living matter. Even the simplest forms of reproduction require cell division: attempts to create a designer cell therefore should include a synthetic cell division machinery. In this review, we will illustrate how nature solves this task, describing membrane remodelling processes in general and focusing on bacterial cell division in particular. We discuss recent progress made in their in vitro reconstitution, identify open challenges, and suggest how purely synthetic building blocks could provide an additional and attractive route to creating artificial cell division machineries.
“…[65] Membrane bound MinD-ATP recruits MinC with a subsequent inhibitory effect on FtsZ-ring assembly. [67] In further experiments, an adapted cDICE method was used to transfer purified MinD and MinE into giant unilamellar vesicles (GUVs). [62] It could be demonstrated that the MinDE reaction and diffusion system can determine the localization of membrane attached molecules in a spatiotemporal manner without specific molecular interactions in vitro.…”
Section: Spatial Positioning Of the Divisome: Finding Mid-cellmentioning
of these details contributes to the applicability of functional modules for synthetic biology. Hence, this review focuses on the recent research on cell division and how the involved systems could be used in vitro to build minimal biomimetic systems, such as a minimal cell.
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