The MiniBooNE Experiment has contributed substantially to beyond standard model searches in the neutrino sector. The experiment was originally designed to test the ∆m 2 ∼ 1 eV 2 region of the sterile neutrino hypothesis by observing ν e (ν e ) charged current quasi-elastic signals from a ν µ (ν µ ) beam. MiniBooNE observed excesses of ν e andν e -candidate events in neutrino and anti-neutrino mode, respectively. To date, these excesses have not been explained within the neutrino Standard Model (νSM), the Standard Model extended for three massive neutrinos. Confirmation is required by future experiments such as MicroBooNE. MiniBooNE also provided an opportunity for precision studies of Lorentz violation. The results set strict limits for the first time on several parameters of the Standard Model-Extension, the generic formalism for considering Lorentz violation. Most recently, an extension to MiniBooNE running, with a beam tuned in beam-dump mode, is being performed to search for dark sector particles. This review describes these studies, demonstrating that short baseline neutrino experiments are rich environments in new physics searches. 1 arXiv:1404.7759v1 [hep-ex] 30 Apr 2014Across the particle physics community, the mysterious periodic-table-like nature of the Standard Model (SM) is motivating searches for new particles, new forces and new properties of the particles that are known. The neutrino sector is proving a rich environment for these searches. Having already found one beyond-Standard-Model (BSM) effect-neutrino mass [1]-a series of experiments are pursuing other potential signals. Unlike the case of three-neutrino oscillation measurements within νSM, many of these searches are pursued over short baselines, from a few meters to approximately a kilometer. The Mini Booster Neutrino Experiment (MiniBooNE) at Fermi National Accelerator Laboratory (Fermilab) is an excellent example, having contributed substantially to BSM studies.This review describes the MiniBooNE BSM program. We begin by describing the experiment. This is followed by a discussion of the MiniBooNE cross section studies, which have been essential input to both the BSM searches within this experiment, and also to other experiments, including T2K most recently [2]. We then describe three searches: the sterile neutrino search which motivated the experiment, Lorentz violation searches which set the first limits on five neutrino sector parameters, and the search for dark sector particles which is now being pursued with a re-configured beam. MiniBooNE (running from 2002MiniBooNE (running from -2012 was originally designed to test the LSND signal [3]. In the LSND experiment, low energy (0 to 53 MeV) muon anti-neutrinos were produced by pion decayat-rest (DAR), and were detected by the liquid-scintillator-based LSND detector at 31 m from the target. The observed 3.8σ excess ofν e candidate events could be interpreted as oscillations in the ∆m 2 ∼ 1 eV 2 region within a simple two massive neutrino oscillation hypothesis, where the oscillation proba...