The ATPâdependent, membraneâstanding metalloprotease FtsH/HflB (filamentation temperatureâsensitive locus H/high frequency of lysogenisation locus B) is universally conserved in eubacteria, chloroplasts, and mitochondria. Its substrates are integral membrane proteins, for example, it degrades the unassembled subunits such as SecY of the SecYEG translocon or the aâsubunit of F
o
ATPase, as well as some soluble proteins, most notably the heat shock factor Ï
32
, the λâphage transcriptional activator λâCII and LpxC, a key enzyme in lipid A biosynthesis. FtsH is the only essential energyâdependent protease in
Escherichia coli
and its knockout shows generally severe phenotypes, for example, malfunctioning of paraplegin, a close homolog in human mitochondria, results in one form of spastic paraplegia. The crystal structure of the cytosolic region reported here reveals a selfâcompartmentalizing protease composed of two hexameric rings. The protease ring exhibits perfect sixfold symmetry with a novel, virtually allâhelical fold of the monomers. The active center is formed by the
427
HEAGH motif and the conserved Asp500 as third zing ligand. The AAA domains have ADP bound and are arranged in a hexameric ring with twofold symmetry only. Two of the essential pore residues Phe234, which are implied in substrate binding and translocation, are located toward the interior of the two rings. This suggests a mechanism of substrate recognition and unfolding.