The loading module for the nystatin polyketide synthase (PKS) in Streptomyces noursei is represented by the NysA protein composed of a ketosynthase (KS S ), acyltransferase, dehydratase, and an acyl carrier protein. The absolute requirement of this protein for initiation of nystatin biosynthesis was demonstrated by the in-frame deletion of the nysA gene in S. noursei. The role of the NysA KS S domain, however, remained unclear, since no data on the significance of the "active site" serine (Ser-170) residue in the loading modules of type I PKSs were available. Site-specific mutagenesis of Ser-170 both in the wild-type NysA and in the hybrid loading module containing malonyl-specific acyltransferase domain from the extender module had no effect on nystatin biosynthesis. A second mutation (S413N) of the NysA KS S domain was discovered that completely abolished the ability of the hybrids to restore nystatin biosynthesis, presumably by affecting the ability of the resulting proteins to catalyze the required substrate decarboxylation. In contrast, NysA and its Ser-170 mutants bearing the same S413N mutation were able to restore nystatin production to significant levels, probably by using acetyl-CoA as a starter unit. Together, these data suggest that the KS S domain of NysA differs from the KS Q domains found in the loading modules of several PKS type I systems in that the active site residue is not significant for its activity.Modular (type I) polyketide synthases (PKSs) 1 are multifunctional proteins responsible for the biosynthesis of structurally diverse natural products, macrolides, with a wide range of pharmacological applications. PKSs catalyze decarboxylative condensations of simple carboxylic acids into the growing polyketide chain by a mechanism similar to the fatty-acid synthases. PKSs, however, are more diverse in their catalytic reactions, including the use of different primer and extender molecules. Each PKS module is a collection of domains with distinct catalytic functions during PKS catalysis, one module being responsible for one condensation step in the biosynthetic pathway. The minimal domains necessary for condensation are ketosynthase (KS), acyltransferase (AT), and acyl carrier protein (ACP). In addition, the domains ketoreductase, dehydratase (DH), and enoyl reductase responsible for different degrees of the reduction state of every -carbon in the polyketide chain may be present in various combinations. It follows that the chemical structure of the final product is largely reflected in the modular organization of the PKS proteins (1).A distinctive feature of modular PKS is the presence of a loading module for chain initiation, which is usually fused to the first extender module. The loading module of the 6-deoxyerythronolide B synthase catalyzing the biosynthesis of the erythromycin macrolactone ring in Saccharopolyspora erythraea is composed of the AT and ACP domains. Although several models for chain initiation have been proposed for this system (2, 3), evidence accumulated so far indicates t...