The mRNA for phenylalanine hydroxylase (phenylalanine 4-monooxygenase, EC 1.14.16.1) has been purified from total rat liver mRNAs, ofwhich it constitutes less than 0.25%, to greater than 10% purity in a single step by specific polysome immunoprecipitation. The purified mRNA was used for synthesis and cloning ofits cDNA. Recombinant colonies containing phenylalanine hydroxylase DNA sequences were identified by differential hybridization, hybrid-selected translation, and blot hybridization analysis. The rat cDNA clone was capable of hybridizing with human phenylalanine hydroxylase mRNA, which will permit the isolation of the corresponding human gene for analysis ofphenylketonuria, a hereditary disorder in phenylalanine metabolism that causes permanent mental retardation in humans.Phenylketonuria (PKU) is a human disorder caused by an inborn error in aromatic amino acid metabolism. Classical phenylketonuria is characterized by a complete lack of phenylalanine hydroxylase activity [phenylalanine 4-monooxygenase; L-phenylalanine,tetrahydropteridine:oxygen oxidoreductase (4-hydroxylating), EC 1.14.16.1] in the liver (1). The enzyme normally catalyzes the oxidation of phenylalanine to tyrosine, the major metabolic pathway of phenylalanine (2). The lack of this enzymatic activity causes persistent hyperphenylalaninemia and minor metabolic pathways for phenylalanine become overutilized (3,4). High levels of phenylalanine and its derivatives are toxic and cause disturbances in tyrosine and tryptophan metabolism (5). Diminished formation of catecholamines, melanin, and serotonin is typical in untreated phenylketonuric patients, and the clinical symptom is severe and permanent mental retardation (5). The condition is autosomal recessive and has a prevalence of about 1 in 10,000 (for review, see ref. 6).Phenylalanine hydroxylase has been purified from livers of rat, monkey, and human (7-9). It is a multimeric enzyme with a subunit molecular weight of about 50,000. Recent evidence has suggested that either the subunits are identical or one is a proteolytic product of the other (10, 11). In order to gain abetter understanding ofthe molecular basis for phenylketonuria at the gene level, we have enriched phenylalanine hydroxylase mRNA from total rat liver polysomes by specific immunoprecipitation and then used the mRNA for the synthesis and cloning of its complementary DNA.
METHODSPurification of Phenylalanine Hydroxylase and Its Antibody. Rat liver phenylalanine hydroxylase was purified by a modification of the procedure described by Shiman et aL (12). Enzyme activity was measured by using the fluorimetric assay for tyrosine (13), and the purity of the enzyme preparation was analyzed by NaDodSO4/polyacrylamide slab gel electrophoresis (14). Purified rat liver phenylalanine hydroxylase was used to immunize a goat, and immunospecificity ofthe antiserum was analyzed by immunodiffusion (15). Specific immunoglobulin molecules against phenylalanine hydroxylase were purified from the crude antiserum by affinity chromatography...