The p-cumate-degrading strain Pseudomonas putida F1 and the m-and p-toluate-degrading strain P. putida mt-2 transform indole-2-carboxylate and indole-3-carboxylate to colored products identified here as indigo, indirubin, and isatin. A mechanism by which these products could be formed spontaneously following dioxygenase-catalyzed dihydroxylation of the indolecarboxylates is proposed. Indolecarboxylates were employed as chromogenic substrates for identifying recombinant bacteria carrying genes encoding p-cumate dioxygenase and toluate dioxygenase. Dioxygenase gene-carrying bacteria could be readily distinguished as dark green-blue colonies among other colorless recombinant Escherichia coli colonies on selective agar plates containing either indole-2-carboxylate or indole-3-carboxylate.Dioxygenases are well recognized as important bacterial enzymes initiating aerobic catabolism of aromatic hydrocarbons (20,37). The actions of these enzymes furnish vicinal cis-dihydrodiols, precursors of o-diphenols which serve as substrates for ring cleavage enzymes. Of the many aromatic hydrocarbons shown to undergo reactions of this type, examples of a range of mono-and multinuclear substrates can be cited. Thus, benzene, toluene, ethylbenzene, cumene (isopropylbenzene), naphthalene, biphenyl, and phenanthrene have all been shown to yield cisdihydrodiols, in many instances with isotopic evidence of incorporation of both atoms of molecular oxygen. A useful chromogenic property of several of these enzyme systems is the ability to oxygenate the heterocyclic ring of indole, facilitating indigo formation (17). This property has been valuable in the cloning of aromatic hydrocarbon dioxygenase genes (10,11,16,29,30,45) and in the development of processes for the industrial production of indigo (32).Dioxygenase reactions leading to 1,2-diphenol formation and ring cleavage are also employed by bacteria in the catabolism of a number of aromatic carboxylic acids. This is the case for compounds such as benzoic acid (35, 36), phthalic acid (2, 15, 38), phenylpropionic (hydrocinnamic) acid (4, 42), m-and p-toluic acids (1, 43), and p-cumic acid (8). These are utilizable carbon sources in their own right but are also established intermediates in the degradation of, respectively, mandelic acid (18), phenanthrene (27, 28), 1-phenylalkanes with oddcarbon-number side chains (39), m-and p-xylene (1, 44), and p-cymene (8).To learn more about p-cumic acid, 2,3-dioxygenase, a study of the range of carboxylic acid substrates acted on by cells of the p-cymene-utilizing strain Pseudomonas putida F1 was undertaken. In the course of this work, it was noted that blue reaction products, reminiscent of indigo, were formed from certain indolecarboxylate isomers. Similar reactions were subsequently found with cells of P. putida mt-2 induced for m-and p-toluate 1,2-dioxygenase activity. The results reported here show that indigo and related products are, in fact, formed from indole-2-carboxylic acid and indole-3-carboxylic acid, and a reaction scheme is proposed...