We report the purification and enzymological characterization of Escherichia coli K-12 pyridoxine (pyridoxamine) 5-phosphate (PNP/PMP) oxidase, which is a key committed enzyme in the biosynthesis of the essential coenzyme pyridoxal 5-phosphate (PLP). The enzyme encoded by pdxH was overexpressed and purified to electrophoretic homogeneity by four steps of column chromatography. The purified PdxH enzyme is a thermally stable 51-kDa homodimer containing one molecule of flavin mononucleotide (FMN). In the presence of molecular oxygen, the PdxH enzyme uses PNP or PMP as a substrate (K m ؍ 2 and 105 M and k cat ؍ 0.76 and 1.72 s ؊1 for PNP and PMP, respectively) and produces hydrogen peroxide. Thus, under aerobic conditions, the PdxH enzyme acts as a classical monofunctional flavoprotein oxidase with an extremely low k cat turnover number. Comparison of k cat /K m values suggests that PNP rather than PMP is the in vivo substrate of E. coli PdxH oxidase. In contrast, the eukaryotic enzyme has similar k cat /K m values for PNP and PMP and seems to act as a scavenger. E. coli PNP/PMP oxidase activities were competitively inhibited by the pathway end product, PLP, and by the analog, 4-deoxy-PNP, with K i values of 8 and 105 M, respectively. Immunoinhibition studies suggested that the catalytic domain of the enzyme may be composed of discontinuous residues on the polypeptide sequence. Two independent quantitation methods showed that PNP/PMP oxidase was present in about 700 to 1,200 dimer enzyme molecules per cell in E. coli growing exponentially in minimal medium plus glucose at 37؇C. Thus, E. coli PNP/PMP oxidase is an example of a relatively abundant, but catalytically sluggish, enzyme committed to PLP coenzyme biosynthesis.Pyridoxal 5Ј-phosphate (PLP) is a ubiquitous, essential coenzyme that participates in many aspects of amino acid metabolism (2). In addition, PLP is the indispensable cofactor of glycogen phosphorylases, including bacterial maltodextrin phosphorylase (19). The final steps of PLP biosynthesis start with pyridoxine (PN; vitamin B 6 ) and PN 5Ј-phosphate (PNP [ Fig. 1]), which are synthesized by many bacteria, plants, and fungi (13,23,50). In Escherichia coli K-12, PN and PNP are thought to be synthesized by a branched pathway from the committed precursors 4-phosphohydroxy-L-threonine and D-1-deoxyxylulose (13,15,22,32,33). It is not yet known whether 4-phosphohydroxy-L-threonine or its dephosphorylated derivative, 4-hydroxy-L-threonine, is condensed with D-1-deoxyxylulose to form the pyridine ring of the vitamin; the first case would give PNP and the second PN as the initial B 6 vitamer synthesized. If PN is formed directly, then the next step in the pathway is phosphorylation catalyzed by the PN/pyridoxal (PL)/pyridoxamine (PM) kinase (Fig. 1). Alternatively, if PNP is the first vitamer synthesized, then the PN/PL/PM kinase would be present in E. coli cells as part of a scavenger pathway, as it is in mammalian cells that cannot synthesize PN (28, 54).The final step in the biosynthetic pathway is ox...