The HIV protease inhibitor lopinavir inhibits Plasmodium falciparum aspartic proteases (plasmepsins) and parasite development, and children receiving lopinavir-ritonavir experienced fewer episodes of malaria than those receiving other antiretroviral regimens. Resistance to lopinavir was selected in vitro over Ïł9 months, with Ïł4-fold decreased sensitivity. Whole-genome sequencing of resistant parasites showed a mutation and increased copy number in pfmdr1 and a mutation in a protein of unknown function, but no polymorphisms in plasmepsin genes.KEYWORDS malaria, Plasmodium falciparum, drug sensitivity, drug resistance, pfmdr1, aspartic protease, antiretroviral, lopinavir, HIV, drug resistance mechanisms I nfection with Plasmodium falciparum, the most virulent human malaria parasite, causes hundreds of millions of illnesses and hundreds of thousands of deaths each year (1). Despite recent progress in some regions, the treatment and control of the disease are challenged by increasing resistance to available therapies (2). New drugs to treat malaria are needed. One approach is to repurpose drugs now used for other indications to treat or prevent malaria.The P. falciparum genome sequence predicts the presence of 10 aspartic proteases, known as plasmepsins (3). Plasmepsins I, II, III (also known as histo-aspartic protease), and IV hydrolyze hemoglobin in the plasmodial food vacuole, in concert with other proteases, to provide amino acids for erythrocytic parasites (4). Plasmepsin V is an endoplasmic reticulum protease that cleaves proteins bound for export to the erythrocyte (5, 6). The functions of plasmepsins VI to X are unknown, with different enzymes believed to be active in erythrocyte-and mosquito-stage parasites (7,8).The HIV protease is also an aspartic protease (9), and inhibitors of this enzyme are among our most important antiretroviral drugs (10). A number of antiretroviral protease inhibitors have been shown to inhibit plasmepsins (11), to be active against cultured malaria parasites (11, 12), and to effectively treat murine malaria (13). Lopinavir, which is used to treat HIV in combination with ritonavir, is active against P. falciparum at low micromolar concentrations that are below the levels achieved by standard dosing (11). HIV-infected Ugandan children who received lopinavir/ritonavir had decreased incidence of malaria compared to those receiving a regimen that did not include a protease inhibitor (14). The impact of lopinavir/ritonavir appeared to be mediated principally by prolonged exposure to the antimalarial lumefantrine after therapy, due to inhibition of metabolism by ritonavir, rather than by protease inhibition, as the effect was greatest in episodes following prior therapy with artemetherlumefantrine. However, considering only the first episodes of malaria, and thus remov- Citation Sonoiki E, Nsanzabana C, Legac J, Sindhe KMV, DeRisi J, Rosenthal PJ. 2017. Altered Plasmodium falciparum sensitivity to the antiretroviral protease inhibitor lopinavir associated with polymorphisms in pf...