Kernel hardness is mainly conditioned by allelic variations of Pina-D1 and Pinb-D1 genes. The Ecotilling approach was optimized to investigate Pina and Pinb alleles in the micro-core collections (MCC) of Chinese wheat germplasm. As a result, three Pina and eight Pinb alleles were found. A novel variant (designated as Pinb-D1x) was discovered in one of the accessions from Xinjiang winter-spring wheat region. Generally, more Pinb alleles were detected in the accessions coming from the regions that grow winter or a mixture of spring and winter wheats.