Using inelastic electron tunneling spectroscopy (IETS) to measure the vibronic structure of nonequilibrium molecular transport, aided by a quantitative interpretation scheme based on Green's functiondensity functional theory methods, we are able to characterize the actual pathways that the electrons traverse when moving through a molecule in a molecular transport junction. We show that the IETS observations directly index electron tunneling pathways along the given normal coordinates of the molecule. One can then interpret the maxima in the IETS spectrum in terms of the specific paths that the electrons follow as they traverse the molecular junction. Therefore, IETS measurements not only prove (by the appearance of molecular vibrational frequencies in the spectrum) that the tunneling charges, in fact, pass through the molecule, but also can be used to determine the transport pathways and how they change with the geometry and placement of molecules in junctions. molecular electronics ͉ molecular junctions ͉ molecular transport T he electron-transfer process is crucial in chemistry, materials science, condensed matter physics, and electrical engineering. Although it is always modeled either explicitly or implicitly by pathways (how electrons actually move within the molecule), there is as yet no direct measurement or observation of such pathways. The pathways idea has been present in physical organic chemistry for years in connection with reaction mechanisms and has been widely used in the interpretation of electron tunneling pathways in proteins (1), but no distinct observations have been made. The absence of direct measurement of pathways is because the measurements are usually made starting with an equilibrium structure, exciting quickly (optical spectroscopy), and then observing the new perturbed structure. Although it is instructive to observe these initial and final states, they are static snapshots and cannot capture the dynamics of the electrontransport process. In molecular transport junctions, where current is moving continuously through the molecule, the nonequilibrium inelastic electron tunneling spectroscopy (IETS) probe permits direct observation of how different modes modulate the transport and, therefore, can be used to deduce actual pathways.It is well established that tunneling electrons can lose energy through excitation of a molecular vibrational level contained within the tunnel junction (2-5). The threshold for such excitation is eV ϭ -h where V is the bias voltage and -h is the energy of the molecular vibration. Peaks in d 2 I/dV 2 versus V, or more commonly the normalized quantity (d 2 I/dV 2 )/(dI/dV) versus V, correspond to molecular vibrations. IETS has become quite popular in the field of molecular electronics over the last 3 years (6-9) and has distinguished itself as a unique spectroscopic probe of molecular junctions. Because an IET spectrum is acquired directly from the measured transport characteristics (Fig. 1), the only added experimental requirement is the ability to cool the ju...