This study examines the variation in microphytobenthos structure and functioning in an intertidal lagoon during a macroalgal covering event. Multivariate techniques, applied on the recorded data, highlighted a clear seasonal pattern except for the July sample. The sudden macroalgae (Cladophora sp.) development, which occurred in that month, enabled us to identify the massive covering as a disturbance factor on the benthic ecosystem. This biotic anomaly affected benthic microalgal production and community respiration, shifting the ecosystem from a highly photoautotrophic to an heterotrophic condition as shown by the BTSIndex. This trophic index is therefore a useful tool for identifying episodic stress events mainly in intertidal habitats.
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