2011
DOI: 10.1371/journal.pone.0015366
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The Inflammatory Microenvironment in Colorectal Neoplasia

Abstract: Colorectal cancer (CRC) is a major cause of mortality and morbidity worldwide. Inflammatory activity within the stroma of invasive colorectal tumours is known to be a key predictor of disease activity with type, density and location of immune cells impacting on patient prognosis. To date, there has been no report of inflammatory phenotype within pre-malignant human colonic adenomas. Assessing the stromal microenvironment and particularly, inflammatory activity within colorectal neoplastic lesions is central to… Show more

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Cited by 156 publications
(154 citation statements)
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“…12 The gene targets were identified using an inflammatory cytokine-targeted macroarray (Oligo-GEArray gene filter, Human Inflammatory Cytokines and Receptors, OHS-011, Superarray Bioscience, Frederick, MD), followed by single-plex SYBR real-time PCR assays using RNA extracted from human normal colon, polyp, and tumor biopsy samples 12 (see Supplemental Tables S1-S3 at http://jmd.amjpathol.org/). The gene target accession numbers were loaded into the Genome Lab GeXP database, together with reference genes [glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and beta-2-microglobulin (B2M)] to design suitable gene-specific primers for reverse transcription and PCR amplification (see Table 2) using GenomeLab eXpress Designer GeXP Software (Beckman Coulter).…”
Section: Custom Design Of a Multiplex Gexp Assay Of Inflammatory Genementioning
confidence: 99%
See 3 more Smart Citations
“…12 The gene targets were identified using an inflammatory cytokine-targeted macroarray (Oligo-GEArray gene filter, Human Inflammatory Cytokines and Receptors, OHS-011, Superarray Bioscience, Frederick, MD), followed by single-plex SYBR real-time PCR assays using RNA extracted from human normal colon, polyp, and tumor biopsy samples 12 (see Supplemental Tables S1-S3 at http://jmd.amjpathol.org/). The gene target accession numbers were loaded into the Genome Lab GeXP database, together with reference genes [glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and beta-2-microglobulin (B2M)] to design suitable gene-specific primers for reverse transcription and PCR amplification (see Table 2) using GenomeLab eXpress Designer GeXP Software (Beckman Coulter).…”
Section: Custom Design Of a Multiplex Gexp Assay Of Inflammatory Genementioning
confidence: 99%
“…The gene-specific primers were designed to generate PCR amplicons that differ in size by 4 to 7 bp, ranging in size from 137 bp to 325 bp ( Table 2). The 14 gene targets were incorporated, together with three reference genes that included GAPDH and B2M (both used previously as reference genes for normalization and calculation of fold changes in single-plex real-time PCR assay of the gene targets) 12 (see Supplemental Tables S2 and S3 at http://jmd.amjpathol.org) and an external synthetic reference control transcript Kan (supplied with the GeXP assay kit, Beckman Coulter) used to spike each reaction. Two reference genes were selected for normalization as recommended for relative quantitative gene expression analysis.…”
Section: Custom Design Of a Multiplex Gexp Assay Of Inflammatory Genementioning
confidence: 99%
See 2 more Smart Citations
“…In colorectal cancer, for example, he discovered there is an inflammatory environment in and around premalignant lesions. Within this region he found nine differentially expressed genes linked with inflammation, including those responsible for IL-8 and the CXCL-family of cytokines 5 .…”
Section: The Environmental Linkmentioning
confidence: 99%