The mouse model of Helicobacter pylori-induced disease using Sydney strain 1 (SS1) has been used extensively in Helicobacter research. Herein we describe the isolation and characterization of a new mouse-colonizing strain for use in comparative studies. One strain capable of persistent mouse colonization was isolated from a total of 110 clinical isolates and is named here SS2000 (Sydney strain 2000). Genome typing revealed a number of differences between SS1 and SS2000 as well as between them and the respective original clinical isolates. In particular, SS2000 lacked the entire cag pathogenicity island, while SS1 contained all 27 genes of the island. C57BL/6 and BALB/c mice were infected with SS1 or SS2000 or were treated with broth medium (controls). After 6 months host-specific effects were evident, including lower colonization levels in the BALB/c animals. Few pathological differences were observed between SS1-and SS2000-infected animals. However, by 15 months postinfection, SS1-infected C57BL/6 mice had developed more severe gastritis than the SS2000-infected animals. In contrast SS2000-infected BALB/c mice showed increased accumulation of mucosa-associated lymphoid tissue compared to those infected with SS1. This improved comparative model of H. pyloriinduced disease allowed dissection of both host and strain effects and thus will prove useful in further studies.Mouse models of Helicobacter pylori-induced disease have been extensively used in Helicobacter research and have been particularly useful in the elucidation of factors required for colonization, distribution and persistence of infection (10,29,31), the contribution of various virulence factors (some examples are given in references 12 and 43), and the development of vaccines (reviewed in reference 28). Early mouse model infection studies utilized Helicobacter felis, a close relative of H. pylori, because no H. pylori strains persistently colonized mice (5, 29). In 1997, Lee et al. isolated H. pylori Sydney strain 1 (SS1) by screening a number of clinical isolates for their ability to colonize mice using a novel technique where a number of strains were pooled and passaged from mouse to mouse. SS1 was found to consistently colonize multiple strains of mice to a high level and to establish infection that persisted over many months, thus providing an ideal opportunity to study the effects of chronic infection and host specificity in this small rodent model (31). The difficulty in finding additional H. pylori strains that persistently colonize mice has hindered studies of strainspecific effects on infection and immunity. Other groups have attempted to isolate new mouse-colonizing strains, but in most cases those strains utilized do not colonize efficiently and often do so only transiently (some examples are given in references 34, 39, and 47). The SS1 mouse model has provided important information regarding H. pylori-related disease, particularly with respect to colonization properties. However, given the lack of well-scrutinized and characterized mouse-...