To develop a technique to compare the intra-tumoral distribution of the drug gemcitabine, its surrogate [ 18 F]-fluoroarabinocytosine ([ 18 F]-FAC) and related chemotherapeutics 5-FU and capecitabine in a pre-clinical model of pancreatic ductal adenocarcinoma (PDAC). Experimental design Using a KPC-organoid derived model of PDAC, we obtained autoradiographic images of the tumor distribution of, [ 14 C]-gemcitabine, [ 14 C]-5-FU, [ 3 H]-capecitabine. These were compared indirectly by co-administering [ 18 F]-FAC, a close analog of gemcitabine with a proven equivalent intra-tumor distribution. The short half-life of 18 F allows for clean separation of 3 H/ 14 C labeled drugs in specimens by dual isotope digital autoradiography. Autoradiographic images of [ 14 C]-gemcitabine, [ 3 H]-capecitabine and [ 14 C]-5-FU were each correlated to [ 18 F]-FAC on a pixel-by-pixel basis. The tumor drug penetration was compared using cumulative histograms. Results Gemcitabine distribution correlated strongly with FAC as expected. 5-FU also gave a similar microdistribution to that of FAC, whereas no correlation was found between capecitabine or its metabolic products and FAC distribution. Accumulation of Gemcitabine and 5-FU was lower in hypoxic regions of the tumor, whereas no such correlation was observed for capecitabine and its metabolites.