RNA interference (RNAi) is considered an ancient antiviral defense in diverse organisms, including insects. Virus infections generate double-strand RNAs (dsRNAs) that trigger the RNAi machinery to process dsRNAs into virus-derived short interfering RNAs (vsiRNAs), which target virus genomes, mRNAs, or replication intermediates. Viruses, in turn, have evolved viral suppressors of RNAi (VSRs) to counter host antiviral RNAi. Following recent discoveries that insects mount an RNAi response against DNA viruses, in this study, we found that Autographa californica multiple nucleopolyhedrovirus (AcMNPV) infection similarly induces an RNAi response in Spodoptera frugiperda cells by generating a large number of vsiRNAs postinfection. Interestingly, we found that AcMNPV expresses a potent VSR to counter RNAi. The viral p35 gene, which is well known as an inhibitor of apoptosis, was found to be responsible for the suppression of RNAi in diverse insect and mammalian cells. The VSR activity of p35 was further confirmed by a p35-null AcMNPV that did not suppress the response. In addition, our results showed that the VSR activity is not due to inhibition of dsRNA cleavage by Dicer-2 but acts downstream in the RNAi pathway. Furthermore, we found that the VSR activity is not linked to the antiapoptotic activity of the protein. Overall, our results provide evidence for the existence of VSR activity in a double-stranded DNA virus and identify the responsible gene, which is involved in the inhibition of RNAi as well as apoptosis.
IMPORTANCEOur findings demonstrate the occurrence of an insect RNAi response against a baculovirus (AcMNPV) that is highly utilized in microbial control, biological and biomedical research, and protein expression. Moreover, our investigations led to the identification of a viral suppressor of RNAi activity and the gene responsible for the activity. Notably, this gene is also a potent inhibitor of apoptosis. The outcomes signify the dual role of a virus-encoded protein in nullifying two key antiviral responses, apoptosis and RNAi.
RNA interference (RNAi) is a highly conserved sequence-specific gene silencing mechanism in diverse eukaryotes, involved in the regulation of some critical processes, including virus-host interactions in insects, plants, fungi, and mammals (1, 2). Viral infections in insects induce an RNAi-based antiviral response through processing of virus-specific double-strand RNAs (dsRNAs) into virus-derived short interfering RNAs (vsiRNAs) by the action of Dicer-2 (DCR-2). vsiRNAs are then loaded into Argonaute-2 (Ago-2), a part of the protein complex known as the RNA-induced silencing complex (RISC). This complex cleaves target RNAs based on sequence complementarity of the loaded small RNA (3). The RNAi-based antiviral response can be mounted through another type of functional noncoding small RNA, microRNA (miRNA). After processing by DCR-1, mature miRNAs are loaded into Ago proteins and guide the miRNA-RISC to mRNA target sequences (4). Unlike siRNA, in animals, miRNA sequences are ...