To characterize the autoantigen of Goodpasture's (anti-glomerular basement membrane) disease, a molecule of 26-kD reactive with autoantibodies from patients' sera was purified from collagenase digests of sheep glomerular basement membrane. Short internal amino acid sequences were obtained after tryptic or cyanogen bromide cleavage, and used to deduce redundant oligonucleotides for use in the polymerase chain reaction on cDNA derived from sheep renal cortex. Molecules of 175 bp were amplified and found to come from two cDNA sequences. One was identical to that of a type IV collagen chain (a5) cloned from human placenta and shown to be expressed in human kidney. The other was from a type IV collagen chain with close similarities to al and a5 chains, and was used to obtain human cDNA sequences by cDNA library screening and by further polymerase chain reaction amplifications.