Sphingolipid metabolites function as signaling molecules in mammalian cells, influencing cell proliferation, migration, and death. Recently, sphingolipid signaling has been implicated in the regulation of developmental processes in Drosophila melanogaster. However, biochemical analysis of endogenous Drosophila sphingoid bases has not been reported. In this study, a rapid HPLC-based method was developed for the analysis of free sphingoid bases endogenous to Drosophila . Four molecular species of endogenous free sphingoid bases were observed in adult flies and identified as C 14 and C 16 sphingosine (Sph) and C 14 and C 16 dihydrosphingosine (DHS). The C 14 molecular species were the most prevalent, accounting for ف 94% of the total free sphingoid bases in adult wild-type flies. An Sph kinase (SK) mutant demonstrated significant accumulation of all four sphingoid bases, whereas a serine palmitoyltransferase mutant demonstrated low but detectable levels. When endogenous sphingoid bases were evaluated at different stages of development, the observed ratio of Sph to DHS increased significantly from early embryo to adulthood. Throughout development, this ratio was significantly lower in the SK mutant as compared with the wild-type. This is the first report describing analysis of free C 14 and C 16 sphingoid bases from Drosophila. The biochemical characterization of these lipids from mutant models of sphingolipid metabolism should greatly facilitate the analysis of the biological significance of these signaling molecules. The biochemical pathways of sphingolipid metabolism have been well characterized in the budding yeast, Saccharomyces cerevisiae , and in mammalian cells ( Fig. 1 ). The free long-chain sphingoid bases (LCBs) and their phosphorylated (LCBP) and acylated (ceramide) derivatives formed in these pathways are potent signaling molecules that have been implicated in signaling pathways that regulate cell death, survival, differentiation, migration, and lipid homeostasis (1-6). Accordingly, methods have been developed for the analysis of these compounds in different cell types. Sphingolipids have been most thoroughly characterized in mammalian cells, in which the predominant molecular species of free LCBs are C 18 and C 20 sphingosine (Sph) and C 18 and C 20 dihydrosphingosine (DHS), and in Saccharomyces cerevisiae , in which the predominant molecular species are C 18 and C 20 phytosphingosine and C 18 and C 20 DHS (7-11). Sphingolipid molecular structures have also been determined for numerous other species (12-19). However, in most of the latter, the sphingoid backbone structures have been determined through degradative analysis of higher order sphingolipids, whereas the structural characterization and quantitation of LCB signaling molecules have not been reported. Despite this caveat, it appears that significant diversity exists among LCBs of different species with regard to carbon chain length, hydroxylation and methylation state, and saturation.Recently, sphingolipid intermediates have been impl...