When chloramphenicol was added to a culture of Bacillus subtilis in early exponential growth, microscopic observation of cells stained by 4',6-diamidino-2-phenylindole showed nucleoids that had changed in appearance from irregular spheres and dumbbells to large, brightly stained spheres and ovals. In contrast, the addition of chloramphenicol to cultures in mid-and late exponential growth showed cells with elongated nucleoids whose frequency and length increased as the culture approached stationary phase. The kinetics of nucleoid elongation after the addition of chloramphenicol to exponential-phase cultures was complex. Immediately after treatment, the rate of nucleoid elongation was very rapid. The nucleoid then elongated steadily for about 4 min, after which the rate of elongation decreased considerably. Nucleoids of cells treated with 6-(p-hydroxyphenylazo)-uracil (an inhibitor of DNA synthesis) exhibited the immediate rapid elongation upon chloramphenicol treatment but not the subsequent changes. These observations suggest that axial filament formation during stationary phase (stage I of sporulation) in the absence of chloramphenicol results from changes in nucleoid structure that are initiated earlier, during exponential growth.Many investigators have sought to describe the arrangement of the nucleoplasm in the procaryotic cell. The subject has remained elusive, partly because the nucleoid undergoes rearrangement during the most gentle manipulations (e.g., rapid filtration and temperature changes, etc. [8]). Thus, after decades of effort, only a few noncontroversial statements can be made: the nucleoid of the exponential-phase cell is localized primarily in the center of the cell but does extend to the periphery of the cytoplasm (2,7,8,12,13); in stationary-phase cells, the nucleoid becomes confined to the center, and this results in a decrease in the density of this portion of the cell (3,6,21).Recently there has been a resurgence of interest in nucleoid structure. In part, this has resulted from the development of cryofixation techniques for electron microscopy (13), the availability of DNA-specific fluorescent stains such as 4',6-diamidino-2-phenylindole (DAPI) (11,17,19,25), and a rich supply of mutants whose phenotypes include characteristics that could be, or are, related to chromosome structure and function. In this light we have developed a method which uses image analysis to characterize the nucleoid in terms of size, shape, and distribution in a cell as the cell proceeds from exponential-to stationary-phase growth. The distinct internal organization of Bacillus subtilis as it undergoes symmetric and asymmetric division offers a model system for exploring nucleoid structure and function during exponential growth and post-exponential-phase differentiation.MATERIALS AND METHODS Growth conditions. B. subtilis BR151 trpC2 lys-3 metB5 (source, F. E. Young) was used for this study. Bacteria were grown in modified Schaeffer's sporulation medium (26). Cultures were grown aerobically (medium-to-flask volume ...