We estimated the energy barriers of proton transfers in the systems of (CF3SO3/H/SO3CF3)− and (CF3SO3/H/H2O/SO3CF3)− as models of a water‐swollen Nafion membrane by an ab initio density functional quantum calculation method with consideration of the hydration effect. As a result, the proton transfer between the SO 3− sites, which is accompanied by one water molecule, was found to be one of the proton‐transfer mechanisms in the water‐swollen Nafion membrane; that is, the surface diffusion mechanism was found to be important for the proton transfer in that membrane. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 1905–1914, 2004