We report an analysis of allelic diversity at short tandem repeat polymorphisms within the fragile XA locus in 1069 male volunteers from twelve Indonesian sub-populations. An odd numbered allele of DXS548 was found at high frequency in all Indonesian populations. Greater allelic diversity was identified at the loci under study than has been previously reported for an Asian population. These differences distinguish the Indonesian population from all previously reported Asian, European and African populations. A high frequency of small premutation alleles, 4\120 (3n3%, 95% CI 0n9-8n3 %), was identified in the Moluccan population of Hiri Island.
The size and AGG-interruption patterns of the FMR1 (CGG) n trinucleotide repeat have been identified as major factors contributing to the risk of developing fragile X syndrome (de Vries et al. 1998 ;Ashley-Koch et al. 1998). As the population prevalence of both the FMR1 greyzone (41-54 CGG repeats), premutation (55-200 CGG repeats) and full mutation alleles ( 200 CGG repeats) have important implications for the rational planning and provision of genetic services, there have been several national and international surveys of allelic diversity at FMR1 and associated polymorphic loci (Rousseau et al.