The organization of alphoid repeated sequences on human nucleolus-organizing (NOR) chromosomes 13, 21, and 22 has been investigated. Analysis of hybridization of alphoid DNA probes to Southern transfers of restriction enzyme-digested DNA fragments from hybrid cells containing single human chromosomes shows that chromosomes 13 and 21 share one subfamily of alphoid repeats, whereas a different subfamily may be held in common by chromosomes 13 and 22. The sequences of cloned 680-base-pair EcoRI fragments of the alphoid DNA from chromosomes 13 and 21 show that the basic unit of this subfamily is indistinguishable on each chromosome. The sequence of cloned 1020-base-pair Xba I fragments from chromosome 22 is related to, but distinguishable from, that of the 680-base-pair EcoRI alphoid subfamily of chromosomes 13 and 21. These results suggest that, at some point after they originated and were homogenized, different subfamilies of alphoid sequences must have exchanged between chromosomes 13 and 21 and separately between chromosomes 13 and 22.One of the models for genomic change that mediates the evolution of new species or generates major changes within a species involves periodic reorganizations of the genome accompanied by amplification of different families of repetitive DNA. The alphoid family of repetitive DNA is found exclusively in primates and has been studied in human and several monkey and ape species. It is believed that different families of this repeat arose prior to the emergence of several of these species, after which the alphoid families have remained relatively unchanged (1). Although the separation of the branches leading to the great apes and humans took place 6-8 million years ago (2), the most significant human evolution has probably taken place within the last few million years. One might therefore expect to find within the human genome families of the alphoid repeat that have been amplified relatively recently, and evidence for one such family has already been reported (3). Recent studies (4)(5)(6) indicate that human alphoid DNA is organized into chromosome-specific subfamilies, formed by the amplification of segments composed of tandemly arranged related copies of the 170-basepair (bp) (monomeric) or 340-bp (dimeric) repeat units.Chromosome specificity of subfamilies of alphoid DNA implies that transfer of sequences between nonhomologous human chromosomes occurs very rarely. However, one group of chromosomes, the nucleolus organizing (NOR) chromosomes, appears to undergo recombination between nonhomologues more frequently than do other chromosomes (7,8), and thus some alphoid families might be expected to be held in common between the NOR chromosomes. We report here studies on the alphoid repetitive DNA in three different human NOR-bearing chromosomes-13, 21, and 22. These chromosomes hold in common a related subfamily of alphoid sequences that has diverged =25% from the average sequence of alphoid repeats. The sequences of tetramers of the basic unit of this alphoid family are indisti...