INTRODUCTIONThe eubacterial genus Helicobacter comprises the gastric Helicobacter species that infect the stomach mucosa of many different kinds of mammals. All of these have developed specific adaptation mechanisms to permit persistent life in the inhospitable environment of the stomach. Helicobacter pylori, the causative agent of chronic gastritis and peptic ulcers in humans, like other Helicobacter species depends on its strong motility to move through the viscous mucus gel lining the epithelium of the human stomach, to establish chronic infection of the human gastric mucosa and to persist in the gastric mucus (Hazell et al., 1986 ; Worku et al., 1999). Flagellar filaments contain FlaA and FlaB subunits in a stoichiometric ratio of approximately ten to one (Kostrzynska et al., 1991 ;Suerbaum et al., 1993 ;Josenhans et al., 1995aJosenhans et al., , 1999. Mutants lacking the major flagellin FlaA show strongly impaired motility in vitro and possess only truncated flagella, whereas flaB mutants have moderately diminished motility and apparently normal flagella. In the gnotobiotic piglet animal model and the H. mustelae-ferret model, isogenic mutants lacking either the FlaB or the FlaA subunits were both severely impaired in their ability to colonize (Andrutis et al., 1997 ;Eaton et al., 1996). Those results demonstrated the importance of both flagellins in vivo. The H. pylori flaA and flaB genes are unlinked on the chromosome and their transcription is regulated by two different promoters (Leying et al., 1992 ;Suerbaum et al., 1993). Expression of flaA is controlled by a σ#)-dependent promoter, a class of promoters responsible for the transcriptional activation of late flagellar genes in many flagellated bacteria (class 3 ;Aizawa, 2000 ;Josenhans et al., 2002). flaB and several other flagellar (Spohn & Scarlato, 1999). Dependency of a number of flagellar genes on the ' environmentally regulated ' σ&% factor has also been observed in Caulobacter crescentus, Vibrio cholerae and Campylobacter species, (Anderson et al., 1995 ;Jagannathan et al., 2001 ;Prouty et al., 2001). However, the evolutionary, environmental and functional basis for the importance of σ&% promoters in flagellar regulation in all these bacterial species is not well established.The genetic background and global regulation of flagellar motility and signal transduction in Helicobacter species have not been thoroughly investigated yet. The complete genome sequences of two H. pylori strains have confirmed that both strains possess most motility genes known from other bacteria, but that these are much less frequently organized in operons than in most other bacteria (Alm et al., 1999 ; Tomb et al., 1997). Based on homology searches, some genes known from other bacteria to be important in motility regulation have not been identified in H. pylori (Josenhans & Suerbaum, 2001 Labigne-Roussel et al., 1988).H. pylori strains were cultured on blood agar plates (Columbia agar base II, Oxoid), supplemented with 10 % sheep blood and the following antibiotics : v...